Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18310125

Identifier: 18310125

GI number: 18310125

Start: 1337651

End: 1337983

Strand: Direct

Name: 18310125

Synonym: CPE1143

Alternate gene names: NA

Gene position: 1337651-1337983 (Clockwise)

Preceding gene: 18310124

Following gene: 18310128

Centisome position: 44.13

GC content: 23.42

Gene sequence:

>333_bases
ATGGGGTTATTTAGTAAAAATAAAGAAAGAAAAGGTTATACTTCTATTGATTCCTATTTAAAAGAAAATAACTTAGATAA
TGATATTAAATCTGTAACAAATGTTAATATATTTTTTATGGATGGAGAAGAAGAGGATTTTTATTTAGAAGATCATATGC
TTTTAAAATTTAAAAACTTCATAGAGAATCCAGAGAAAGATTTTTTAGTATTGAAATATTATTCCTCATTGTATAGTGAT
GGTTTTAGCCTTGAAGAAATTACTTTAATGAGACATGGAATATGTAGATTTAGAATTGATAGTGAAAAGGAAAATATACT
TGTATCTGATTAA

Upstream 100 bases:

>100_bases
TAAAGAGTATCCAAGAGTGGATACTCTTTTTTATATTTAAAAAGAGTAATATTAAATGTTATAATATTTCTATGTAAACA
GTATACGGGGGTAAGAGGTA

Downstream 100 bases:

>100_bases
TAAAAAATTAGCTTTTAAAAAAGATGACAAATTTTAAAGAGGAGATAGTTTAGTGTGAAAAATAAAGCTATCTCCTCTAA
AATTTTTAATACTATGATAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MGLFSKNKERKGYTSIDSYLKENNLDNDIKSVTNVNIFFMDGEEEDFYLEDHMLLKFKNFIENPEKDFLVLKYYSSLYSD
GFSLEEITLMRHGICRFRIDSEKENILVSD

Sequences:

>Translated_110_residues
MGLFSKNKERKGYTSIDSYLKENNLDNDIKSVTNVNIFFMDGEEEDFYLEDHMLLKFKNFIENPEKDFLVLKYYSSLYSD
GFSLEEITLMRHGICRFRIDSEKENILVSD
>Mature_109_residues
GLFSKNKERKGYTSIDSYLKENNLDNDIKSVTNVNIFFMDGEEEDFYLEDHMLLKFKNFIENPEKDFLVLKYYSSLYSDG
FSLEEITLMRHGICRFRIDSEKENILVSD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13074; Mature: 12943

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLFSKNKERKGYTSIDSYLKENNLDNDIKSVTNVNIFFMDGEEEDFYLEDHMLLKFKNF
CCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCEEEEEECCCCCEEECCHHHHHHHHH
IENPEKDFLVLKYYSSLYSDGFSLEEITLMRHGICRFRIDSEKENILVSD
HCCCCCCEEEHHHHHHHHCCCCCHHHHHHHHCCEEEEEECCCCCCEEECC
>Mature Secondary Structure 
GLFSKNKERKGYTSIDSYLKENNLDNDIKSVTNVNIFFMDGEEEDFYLEDHMLLKFKNF
CCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCEEEEEECCCCCEEECCHHHHHHHHH
IENPEKDFLVLKYYSSLYSDGFSLEEITLMRHGICRFRIDSEKENILVSD
HCCCCCCEEEHHHHHHHHCCCCCHHHHHHHHCCEEEEEECCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA