| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is 18310123
Identifier: 18310123
GI number: 18310123
Start: 1335992
End: 1336501
Strand: Direct
Name: 18310123
Synonym: CPE1141
Alternate gene names: NA
Gene position: 1335992-1336501 (Clockwise)
Preceding gene: 18310122
Following gene: 18310124
Centisome position: 44.07
GC content: 17.45
Gene sequence:
>510_bases ATGAAAACAAACGCTATTAACTTATTTAACTTTGTGCTTTTTATATCTTTTTCATGTATTTTTATAAAGAATTGGTTTAT TTATAAAAGATTATTTTCTAATGAATCCTATTATATTAATCCAAGCATAAAAAAGGATATACAAAAGCTTACATTATTCA AATTTTTATCTGTAATTATACAGTTAACAGTAGTTGCAACTTTACAATTAATATTATTTTTTTATACAAACAAAATTAAT TTTTTTAATATAGCAGCTTTATATTTTTTAATATATGCCTTTAATTTATCAATCTCTATAAATAACGATTATATTTATAG AAATTTTAAATTAATAAAAAAGTCTGATATAGATTATTTTAATTTAGATTACAAAAATAATATTGTAAAGATATATTTAA AAGGTAAAAAGAAACCAATTATAATAGCATTTAAAAAAGACTTATCTAATTTGGCAAAGCTTTTAAATAAATTAGGATAT AAAGAACTTTTGACTAGGAAAAATTTTTAA
Upstream 100 bases:
>100_bases AATATGCATTGTTAAAAACATGTATATCATTATAAACTTTACATAATATACATAACTTGTTAATATTAAATTGAGATTTT AATATAACGGGGAGAATTAA
Downstream 100 bases:
>100_bases TACTACTTTATAATAAAAGTTTCAGTGTTATTAACTTTAAATAAAGAAAATATATTATTTTAATTACAAGAAACAGTTAA AAACCAGTTGATTTCCATAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 169; Mature: 169
Protein sequence:
>169_residues MKTNAINLFNFVLFISFSCIFIKNWFIYKRLFSNESYYINPSIKKDIQKLTLFKFLSVIIQLTVVATLQLILFFYTNKIN FFNIAALYFLIYAFNLSISINNDYIYRNFKLIKKSDIDYFNLDYKNNIVKIYLKGKKKPIIIAFKKDLSNLAKLLNKLGY KELLTRKNF
Sequences:
>Translated_169_residues MKTNAINLFNFVLFISFSCIFIKNWFIYKRLFSNESYYINPSIKKDIQKLTLFKFLSVIIQLTVVATLQLILFFYTNKIN FFNIAALYFLIYAFNLSISINNDYIYRNFKLIKKSDIDYFNLDYKNNIVKIYLKGKKKPIIIAFKKDLSNLAKLLNKLGY KELLTRKNF >Mature_169_residues MKTNAINLFNFVLFISFSCIFIKNWFIYKRLFSNESYYINPSIKKDIQKLTLFKFLSVIIQLTVVATLQLILFFYTNKIN FFNIAALYFLIYAFNLSISINNDYIYRNFKLIKKSDIDYFNLDYKNNIVKIYLKGKKKPIIIAFKKDLSNLAKLLNKLGY KELLTRKNF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20208; Mature: 20208
Theoretical pI: Translated: 10.48; Mature: 10.48
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTNAINLFNFVLFISFSCIFIKNWFIYKRLFSNESYYINPSIKKDIQKLTLFKFLSVII CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHH QLTVVATLQLILFFYTNKINFFNIAALYFLIYAFNLSISINNDYIYRNFKLIKKSDIDYF HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEECCCEEEEEEEEEEECCCCEE NLDYKNNIVKIYLKGKKKPIIIAFKKDLSNLAKLLNKLGYKELLTRKNF ECCCCCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHHCCHHHHHHCCCC >Mature Secondary Structure MKTNAINLFNFVLFISFSCIFIKNWFIYKRLFSNESYYINPSIKKDIQKLTLFKFLSVII CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHH QLTVVATLQLILFFYTNKINFFNIAALYFLIYAFNLSISINNDYIYRNFKLIKKSDIDYF HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEECCCEEEEEEEEEEECCCCEE NLDYKNNIVKIYLKGKKKPIIIAFKKDLSNLAKLLNKLGYKELLTRKNF ECCCCCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHHCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA