| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is bcn [H]
Identifier: 18310120
GI number: 18310120
Start: 1332512
End: 1333426
Strand: Direct
Name: bcn [H]
Synonym: CPE1138
Alternate gene names: 18310120
Gene position: 1332512-1333426 (Clockwise)
Preceding gene: 18310119
Following gene: 18310122
Centisome position: 43.96
GC content: 29.95
Gene sequence:
>915_bases ATGGATATTAAGAAAGTATATTTAAAAGGTCAAGAAGAAGCTAAAGGATGGAATAAACCAAACAAAATTATAATACACCA TCCAGAATATAACGGATCTATAGAAGGACTAAACGATATTATGAGAAGCATGGGATTTTATATGATAGGATATAATTTCT ATGTACGTAAAGATGGTACAGTATATGAAGGTAGACCAGTATGGGCAACAGGAGCTAACTGTTATGGTCACAATCATGAT AGTATAGGTGTATGTTTTGAAGGCAATTATGATAAAGAAACTGATATGCCACAAGAACAATTTAATGCTGGTGTAGAACT TATAAAATATCTAAAAAGTAAATATGGTATTAATGAAGTTAATGGACATAAACACTATTACAATACAGCTTGTCCAGGAC AATATTTCCCACTAGAAAAAATGTTAAGTTGCTTAGATGGACAATTACAACAAGAAGTTATTTCTAACACACCTCAAGTT ACTAATAACAATATAGATATTAAAGCTAATGCTAAAGTCATTAATGATTTTTTATATGCTAGAGATATTAATGGTAATAA AGTTGGTGGATATGTTAGTATAGGAGATAATATAGAGGTATTAGATGTTAGCTATAGTAAACAACTAGATAGAATCAAAT ATCCAACAAGTAATGGAGCTAAAGAAAGATATGTTACAAATGCAACTAACTGTATAGAATATTTTTACCAAGATCAATGG CAAAATGGAAGCACTCCAGAACCAGTATACCAAGATAGTTCTTGTAGTCAAAAAATAGGAACGTTAAACCCTTATGAAAA AGCTACTCCTATATACAGAAAAGACGGTGTCCTTCACATAGTTTATTCTACAGATAAGGGTAGAAATACAAAATCTGGGT ATGTAAGATATAATGGTGAATTTAGTATTTTTTAA
Upstream 100 bases:
>100_bases GCTTTTTATTTTGGACAAAGTTTAGCAAGTAGAAGTAATAATAAGCAAGGGTTAGGAGAATAATCTCTTAGCCTTTTTGT TTTATAAGGAGGTAATTAAT
Downstream 100 bases:
>100_bases ATGTTTATAATACATATTATATGTTAATAATTAGAATGATGAAATATTATCTGGAGGGATTAATTATGGAGTTATTCTAT GGCTTATTAAGTTTTGCAGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 304
Protein sequence:
>304_residues MDIKKVYLKGQEEAKGWNKPNKIIIHHPEYNGSIEGLNDIMRSMGFYMIGYNFYVRKDGTVYEGRPVWATGANCYGHNHD SIGVCFEGNYDKETDMPQEQFNAGVELIKYLKSKYGINEVNGHKHYYNTACPGQYFPLEKMLSCLDGQLQQEVISNTPQV TNNNIDIKANAKVINDFLYARDINGNKVGGYVSIGDNIEVLDVSYSKQLDRIKYPTSNGAKERYVTNATNCIEYFYQDQW QNGSTPEPVYQDSSCSQKIGTLNPYEKATPIYRKDGVLHIVYSTDKGRNTKSGYVRYNGEFSIF
Sequences:
>Translated_304_residues MDIKKVYLKGQEEAKGWNKPNKIIIHHPEYNGSIEGLNDIMRSMGFYMIGYNFYVRKDGTVYEGRPVWATGANCYGHNHD SIGVCFEGNYDKETDMPQEQFNAGVELIKYLKSKYGINEVNGHKHYYNTACPGQYFPLEKMLSCLDGQLQQEVISNTPQV TNNNIDIKANAKVINDFLYARDINGNKVGGYVSIGDNIEVLDVSYSKQLDRIKYPTSNGAKERYVTNATNCIEYFYQDQW QNGSTPEPVYQDSSCSQKIGTLNPYEKATPIYRKDGVLHIVYSTDKGRNTKSGYVRYNGEFSIF >Mature_304_residues MDIKKVYLKGQEEAKGWNKPNKIIIHHPEYNGSIEGLNDIMRSMGFYMIGYNFYVRKDGTVYEGRPVWATGANCYGHNHD SIGVCFEGNYDKETDMPQEQFNAGVELIKYLKSKYGINEVNGHKHYYNTACPGQYFPLEKMLSCLDGQLQQEVISNTPQV TNNNIDIKANAKVINDFLYARDINGNKVGGYVSIGDNIEVLDVSYSKQLDRIKYPTSNGAKERYVTNATNCIEYFYQDQW QNGSTPEPVYQDSSCSQKIGTLNPYEKATPIYRKDGVLHIVYSTDKGRNTKSGYVRYNGEFSIF
Specific function: May function as an ionophore [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000834 - InterPro: IPR003646 - InterPro: IPR013247 [H]
Pfam domain/function: PF00246 Peptidase_M14; PF08239 SH3_3 [H]
EC number: NA
Molecular weight: Translated: 34659; Mature: 34659
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIKKVYLKGQEEAKGWNKPNKIIIHHPEYNGSIEGLNDIMRSMGFYMIGYNFYVRKDGT CCCCEEEECCCHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCEEEEEEEEEEECCCE VYEGRPVWATGANCYGHNHDSIGVCFEGNYDKETDMPQEQFNAGVELIKYLKSKYGINEV EECCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC NGHKHYYNTACPGQYFPLEKMLSCLDGQLQQEVISNTPQVTNNNIDIKANAKVINDFLYA CCCCCEECCCCCCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHE RDINGNKVGGYVSIGDNIEVLDVSYSKQLDRIKYPTSNGAKERYVTNATNCIEYFYQDQW ECCCCCCCCEEEEECCCEEEEEECHHHHHHHEECCCCCCCCHHEECCHHHHHHHHHHHHC QNGSTPEPVYQDSSCSQKIGTLNPYEKATPIYRKDGVLHIVYSTDKGRNTKSGYVRYNGE CCCCCCCCCCCCCCHHHHCCCCCCHHHCCCCEECCCEEEEEEECCCCCCCCCCEEEECCE FSIF EECC >Mature Secondary Structure MDIKKVYLKGQEEAKGWNKPNKIIIHHPEYNGSIEGLNDIMRSMGFYMIGYNFYVRKDGT CCCCEEEECCCHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCEEEEEEEEEEECCCE VYEGRPVWATGANCYGHNHDSIGVCFEGNYDKETDMPQEQFNAGVELIKYLKSKYGINEV EECCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC NGHKHYYNTACPGQYFPLEKMLSCLDGQLQQEVISNTPQVTNNNIDIKANAKVINDFLYA CCCCCEECCCCCCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHE RDINGNKVGGYVSIGDNIEVLDVSYSKQLDRIKYPTSNGAKERYVTNATNCIEYFYQDQW ECCCCCCCCEEEEECCCEEEEEECHHHHHHHEECCCCCCCCHHEECCHHHHHHHHHHHHC QNGSTPEPVYQDSSCSQKIGTLNPYEKATPIYRKDGVLHIVYSTDKGRNTKSGYVRYNGE CCCCCCCCCCCCCCHHHHCCCCCCHHHCCCCEECCCEEEEEEECCCCCCCCCCEEEECCE FSIF EECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2901768; 2877971; 2460717 [H]