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The map label for this gene is rhaR [H]

Identifier: 18309962

GI number: 18309962

Start: 1180337

End: 1181155

Strand: Reverse

Name: rhaR [H]

Synonym: CPE0980

Alternate gene names: 18309962

Gene position: 1181155-1180337 (Counterclockwise)

Preceding gene: 18309965

Following gene: 18309961

Centisome position: 38.96

GC content: 22.59

Gene sequence:

>819_bases
ATGAGTAATTACATATATGAAAATCACTTTCATAGTGATCCTAATTTCCCAGTAATATTTCATTGTGATATTTTAAATAA
AAATAGACCTAGTTTTTTGATGCATTATCATGAAAATATAGAACTTCTCTACTTCTTAGATGGACATGCTAAGGTTGTTT
GTGATAATAAAATACTTCAAGCTAAAGCTGATGATATTATAATAATTAATTCAAAGGAACTTCATTCCATAGAAAAAATA
TCTGATTCCTGTAAATATTACTGCCTTATTATAGATAAAGATTTACTTAATGATAATTTAAATGATTTTGATAATTTTAG
ATTTAAAAACTTAGTTAAAGATTCCTTTTTAAAGACCAAGATTGAGGAAATAAATAGAGAATTAAATAATAAAAATGATT
ATTTTAAAGAATTTATAAAATCAGATATACTTCAAATTTTAATTCATATTAAGAGAAACCATGCTCAAAAAAACTCATCA
TTAATAAAAATAAAAGATAATAATAAAATACTAATGGTAAGAGAAATAATAAACTATCTAAAAGAAAACTATAAAGAAGA
AATTTCAATCGATCATATATGTAACCATGTTGCTTTTAGTAAATATTATACCTGTCGTACCTTTAAGGAGGTAACAGGGC
AAACTATTTTAGATCATATTAATCATATTAGATGTATTAATGCTAGAAATTTAATCCTCTATAATGGATATACTATATCT
GAAAGTGCTTATAAAAGCGGTTTTAATAACTTATCTTATTTTTCAAAAACCTATAAAAAATATATGGGATTACTTCCATC
TGAAGAAAAAATTACATAA

Upstream 100 bases:

>100_bases
AATTTAAATGTTTACTATTATTATATAAAATAATTTTATTTATTTAAGTAAGTATTTTGCTGTTATTTAACACAATATTG
CTTTTTATATAGGAGGAATT

Downstream 100 bases:

>100_bases
TTTAAGTATTATAAAGTAATCTCAAGATACTGCCATCTATTATTAATAGAATAATAATTTCTGTTAATAATTTTTATAAA
TTAGTTTGCTTAATTTTCTT

Product: transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon transcriptional activator rhaR [H]

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MSNYIYENHFHSDPNFPVIFHCDILNKNRPSFLMHYHENIELLYFLDGHAKVVCDNKILQAKADDIIIINSKELHSIEKI
SDSCKYYCLIIDKDLLNDNLNDFDNFRFKNLVKDSFLKTKIEEINRELNNKNDYFKEFIKSDILQILIHIKRNHAQKNSS
LIKIKDNNKILMVREIINYLKENYKEEISIDHICNHVAFSKYYTCRTFKEVTGQTILDHINHIRCINARNLILYNGYTIS
ESAYKSGFNNLSYFSKTYKKYMGLLPSEEKIT

Sequences:

>Translated_272_residues
MSNYIYENHFHSDPNFPVIFHCDILNKNRPSFLMHYHENIELLYFLDGHAKVVCDNKILQAKADDIIIINSKELHSIEKI
SDSCKYYCLIIDKDLLNDNLNDFDNFRFKNLVKDSFLKTKIEEINRELNNKNDYFKEFIKSDILQILIHIKRNHAQKNSS
LIKIKDNNKILMVREIINYLKENYKEEISIDHICNHVAFSKYYTCRTFKEVTGQTILDHINHIRCINARNLILYNGYTIS
ESAYKSGFNNLSYFSKTYKKYMGLLPSEEKIT
>Mature_271_residues
SNYIYENHFHSDPNFPVIFHCDILNKNRPSFLMHYHENIELLYFLDGHAKVVCDNKILQAKADDIIIINSKELHSIEKIS
DSCKYYCLIIDKDLLNDNLNDFDNFRFKNLVKDSFLKTKIEEINRELNNKNDYFKEFIKSDILQILIHIKRNHAQKNSSL
IKIKDNNKILMVREIINYLKENYKEEISIDHICNHVAFSKYYTCRTFKEVTGQTILDHINHIRCINARNLILYNGYTISE
SAYKSGFNNLSYFSKTYKKYMGLLPSEEKIT

Specific function: Activates expression of the rhaSR operon in response to L-rhamnose [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790559, Length=257, Percent_Identity=21.4007782101167, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32316; Mature: 32185

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNYIYENHFHSDPNFPVIFHCDILNKNRPSFLMHYHENIELLYFLDGHAKVVCDNKILQ
CCCCEECCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCEEEEEEECCCEEEEECCCEEE
AKADDIIIINSKELHSIEKISDSCKYYCLIIDKDLLNDNLNDFDNFRFKNLVKDSFLKTK
ECCCCEEEECCHHHHHHHHHHCCCEEEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHH
IEEINRELNNKNDYFKEFIKSDILQILIHIKRNHAQKNSSLIKIKDNNKILMVREIINYL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEHHHHHHHH
KENYKEEISIDHICNHVAFSKYYTCRTFKEVTGQTILDHINHIRCINARNLILYNGYTIS
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECCEEEC
ESAYKSGFNNLSYFSKTYKKYMGLLPSEEKIT
HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SNYIYENHFHSDPNFPVIFHCDILNKNRPSFLMHYHENIELLYFLDGHAKVVCDNKILQ
CCCEECCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCEEEEEEECCCEEEEECCCEEE
AKADDIIIINSKELHSIEKISDSCKYYCLIIDKDLLNDNLNDFDNFRFKNLVKDSFLKTK
ECCCCEEEECCHHHHHHHHHHCCCEEEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHH
IEEINRELNNKNDYFKEFIKSDILQILIHIKRNHAQKNSSLIKIKDNNKILMVREIINYL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEHHHHHHHH
KENYKEEISIDHICNHVAFSKYYTCRTFKEVTGQTILDHINHIRCINARNLILYNGYTIS
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECCEEEC
ESAYKSGFNNLSYFSKTYKKYMGLLPSEEKIT
HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA