| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18309857
Identifier: 18309857
GI number: 18309857
Start: 1075490
End: 1076617
Strand: Direct
Name: 18309857
Synonym: CPE0875
Alternate gene names: NA
Gene position: 1075490-1076617 (Clockwise)
Preceding gene: 18309856
Following gene: 18309858
Centisome position: 35.48
GC content: 33.69
Gene sequence:
>1128_bases ATGGCAGATCAAAGATTAAATAAGTTAGCTAAACTGCTTGTAAATTATTCAACAGGAGTTAAGGAAGGGAACTTTGTTTT TGTATCTTGTAATGAGGTTGCAAATCCTTGGCTTACTGAGGTAGTAAAGGAAGCTACTAAGGCAGGAGCTCATGTTGAGT ATATTTTAGAATCAGAAGAAGCTAAGGAGGCAAGACTTAAATTTTCTACAAAGGATCAATTATTATCAGGAAATTTAATA ATGGAAACTATGCTTGAAAAGGCAGATGTTTGGTTAAGTGCATGGGGAGCTAGAAATACTAGAGCCTTTAGCAATATAGA TTCAGAAAAAATAAAAGATAGCAGAGCTGGAGAAAAGGGATGGAGAAAGTTCTATTCAGGAAGAATGGGAGATGGCTCTT TAAGATGGTGTGGAACTCAATTTCCTACATATGCAGATGCACAGGAAGCTTCAATGAGTTTTAGTGAATATGAAGATTTT GTTTATGGAGCAGGACTTTTAGACCATGAAGATCCTGTAGCAGAATGGAATAGAGTAAGCAAAGAACAAGAAAGATGGGT TAAATATTTAGATACTAAAAAAGAACTTCATATTTTAGCAGAAGAAACTGATATTAAGGTCTCAGTAGAGGGAAGAAAGT GGATAAATTGTGATGGTAGAGTAAACTTTCCAGATGGTGAAATATTTACATCACCAGTTGAAAATAAGATAAATGGACAT ATAACTTTTTCATTCCCAGGTATTTATGCAGGAAAGGAAATAGAGGGTATAGAGCTTGAAGTTAAAGATGGTAAAGTTGT TTCATATAAAGCTAAAAAAGGAGAAGATTTATTAAAGGCTTTATTAGAAACTGATGAAGGAGCAAGCCATTTTGGAGAAG TAGCTATAGGTACAAACTATGGAATTAAGAAGTTTACTAGAAATATGCTATTTGATGAGAAAATAGGAGGAACAGTTCAT ATGGCTATAGGAGATTCTATGCCAGAGGCTGGTGGTAAAAATAGATCATCACTTCATTGGGACATGCTTTGTGACATGAG AAATGGTGGAAGAATATATGCAGATGGAGAACTTTTCTATGAAAATGGAGAGTTTAAAAAAGAAATATTAGAAAAATATA ATCTTTAA
Upstream 100 bases:
>100_bases AACTAGTTTTAAAAATTTATTGTTATTAATAAAAAATAGTAAGTTAAAATAGAATTCAAAAATTAAAATATATAAATTTG TATGTTTAGGAGGTATATGT
Downstream 100 bases:
>100_bases TATTATATATAAATTATAGAATAATAATTAAATTAGGGGATGAAGAGACTCATCTCCTAATTTAATTCTAGTTGAATTTT AAAATAATGGGAGTATAAGA
Product: metalloprotease family protein
Products: NA
Alternate protein names: Aminopeptidase II; AP-II [H]
Number of amino acids: Translated: 375; Mature: 374
Protein sequence:
>375_residues MADQRLNKLAKLLVNYSTGVKEGNFVFVSCNEVANPWLTEVVKEATKAGAHVEYILESEEAKEARLKFSTKDQLLSGNLI METMLEKADVWLSAWGARNTRAFSNIDSEKIKDSRAGEKGWRKFYSGRMGDGSLRWCGTQFPTYADAQEASMSFSEYEDF VYGAGLLDHEDPVAEWNRVSKEQERWVKYLDTKKELHILAEETDIKVSVEGRKWINCDGRVNFPDGEIFTSPVENKINGH ITFSFPGIYAGKEIEGIELEVKDGKVVSYKAKKGEDLLKALLETDEGASHFGEVAIGTNYGIKKFTRNMLFDEKIGGTVH MAIGDSMPEAGGKNRSSLHWDMLCDMRNGGRIYADGELFYENGEFKKEILEKYNL
Sequences:
>Translated_375_residues MADQRLNKLAKLLVNYSTGVKEGNFVFVSCNEVANPWLTEVVKEATKAGAHVEYILESEEAKEARLKFSTKDQLLSGNLI METMLEKADVWLSAWGARNTRAFSNIDSEKIKDSRAGEKGWRKFYSGRMGDGSLRWCGTQFPTYADAQEASMSFSEYEDF VYGAGLLDHEDPVAEWNRVSKEQERWVKYLDTKKELHILAEETDIKVSVEGRKWINCDGRVNFPDGEIFTSPVENKINGH ITFSFPGIYAGKEIEGIELEVKDGKVVSYKAKKGEDLLKALLETDEGASHFGEVAIGTNYGIKKFTRNMLFDEKIGGTVH MAIGDSMPEAGGKNRSSLHWDMLCDMRNGGRIYADGELFYENGEFKKEILEKYNL >Mature_374_residues ADQRLNKLAKLLVNYSTGVKEGNFVFVSCNEVANPWLTEVVKEATKAGAHVEYILESEEAKEARLKFSTKDQLLSGNLIM ETMLEKADVWLSAWGARNTRAFSNIDSEKIKDSRAGEKGWRKFYSGRMGDGSLRWCGTQFPTYADAQEASMSFSEYEDFV YGAGLLDHEDPVAEWNRVSKEQERWVKYLDTKKELHILAEETDIKVSVEGRKWINCDGRVNFPDGEIFTSPVENKINGHI TFSFPGIYAGKEIEGIELEVKDGKVVSYKAKKGEDLLKALLETDEGASHFGEVAIGTNYGIKKFTRNMLFDEKIGGTVHM AIGDSMPEAGGKNRSSLHWDMLCDMRNGGRIYADGELFYENGEFKKEILEKYNL
Specific function: Broad specificity metal-dependent exopeptidase, releasing all N-terminal amino acids [H]
COG id: COG2309
COG function: function code E; Leucyl aminopeptidase (aminopeptidase T)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M29 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000787 [H]
Pfam domain/function: PF02073 Peptidase_M29 [H]
EC number: NA
Molecular weight: Translated: 42322; Mature: 42191
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADQRLNKLAKLLVNYSTGVKEGNFVFVSCNEVANPWLTEVVKEATKAGAHVEYILESEE CCHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEEEECCCH AKEARLKFSTKDQLLSGNLIMETMLEKADVWLSAWGARNTRAFSNIDSEKIKDSRAGEKG HHHHHEEECCHHHHHCCCHHHHHHHHHHHHHEEECCCCCCCHHHCCCHHHHHHHCCCHHH WRKFYSGRMGDGSLRWCGTQFPTYADAQEASMSFSEYEDFVYGAGLLDHEDPVAEWNRVS HHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHCC KEQERWVKYLDTKKELHILAEETDIKVSVEGRKWINCDGRVNFPDGEIFTSPVENKINGH HHHHHHHHHHCCCCCEEEEEECCCEEEEECCCEEECCCCEEECCCCCEECCCCCCCCCCE ITFSFPGIYAGKEIEGIELEVKDGKVVSYKAKKGEDLLKALLETDEGASHFGEVAIGTNY EEEECCCEECCCCCCCEEEEEECCEEEEEECCCCHHHHHHHHHCCCCCHHHCCEEECCCC GIKKFTRNMLFDEKIGGTVHMAIGDSMPEAGGKNRSSLHWDMLCDMRNGGRIYADGELFY CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEEECCEEEE ENGEFKKEILEKYNL ECCCHHHHHHHHHCC >Mature Secondary Structure ADQRLNKLAKLLVNYSTGVKEGNFVFVSCNEVANPWLTEVVKEATKAGAHVEYILESEE CHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEEEECCCH AKEARLKFSTKDQLLSGNLIMETMLEKADVWLSAWGARNTRAFSNIDSEKIKDSRAGEKG HHHHHEEECCHHHHHCCCHHHHHHHHHHHHHEEECCCCCCCHHHCCCHHHHHHHCCCHHH WRKFYSGRMGDGSLRWCGTQFPTYADAQEASMSFSEYEDFVYGAGLLDHEDPVAEWNRVS HHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHCC KEQERWVKYLDTKKELHILAEETDIKVSVEGRKWINCDGRVNFPDGEIFTSPVENKINGH HHHHHHHHHHCCCCCEEEEEECCCEEEEECCCEEECCCCEEECCCCCEECCCCCCCCCCE ITFSFPGIYAGKEIEGIELEVKDGKVVSYKAKKGEDLLKALLETDEGASHFGEVAIGTNY EEEECCCEECCCCCCCEEEEEECCEEEEEECCCCHHHHHHHHHCCCCCHHHCCEEECCCC GIKKFTRNMLFDEKIGGTVHMAIGDSMPEAGGKNRSSLHWDMLCDMRNGGRIYADGELFY CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEEECCEEEE ENGEFKKEILEKYNL ECCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9362117; 938681 [H]