| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18309718
Identifier: 18309718
GI number: 18309718
Start: 913050
End: 914381
Strand: Direct
Name: 18309718
Synonym: CPE0736
Alternate gene names: NA
Gene position: 913050-914381 (Clockwise)
Preceding gene: 18309717
Following gene: 18309721
Centisome position: 30.12
GC content: 27.63
Gene sequence:
>1332_bases ATGAAAGAAATTAAACTAAGTAGAATAGATATATTTTCTATAGTTTTGGGAGCCATAATTGGATGGGGATCATTTATGCT ACCTGGAACTAAATTTTTAAAGGAGTCTGGGGTAATAAATACTTTCCTAGGGCTTTTTTTAGGGGTAATATGTATAATTA TTATTGAAAAAAACTATTTAATAATGATGCAAACTCACGATGAAGAGGGAGGAGAGTTCTCTTTTACTTATAATAATTTA GGAAAGAAACATGGATTTATTGTGGGATGGTTTTTAACTTTGGCTTATTTTACAATGATTCCATTAAATGCAACTGCATT TCCACTTGTAATCAAGAAGATATTTGGTGGGATTTTAGAATTTGGTTATTTATATAATGTAGCTGGATATAATATTTATC TAGGAGAAATATTAACATCAAGTATAATAATAATTGCTTTTGCAGCATTAAATTTAAATGGGATAAAGAAAACAAGTAAA GTTCAGAACTTAATAATTTTTAGCTTAATATCAATGACTTTTATTGTTTTAGTTGGCATGATAATTAAAGGAAACAGAAT AGATTTTATTAATACATATATTAATAAATATTCTTTTGATTTAAGTCAAATAATAAAAGTATTTGCTATAACACCTTTTG CTTTTATAGGCTTTGATGCTATTCCACAATTAAGTAAAGAATTAAACTTTTCTAAGAAAAAGGCATCAAGGGTAGCAGTG ATTTCCTTAGTTATGGGTGCATTAATTTATAATATATTAAATATTATAACTGCCTTAGCTTATTCACCAGAACAAGCAAG TTCTTTAGAATGGGCAGCTGGAAGTGCTGTATTAAGCATTTTAGGCAAAGGAGCCTTCTTTTTACTTATAATAGCTTTAA CTGCCGCTGTATGGAGTGGGATAAATGGATTTATGATTTGTAGTTCTAAATTATTAGGATCTATAGCAAATTATAAAATG CTTCCTTCTAAGATGGGAAAGGTAAATAAAAATGGAGTCTTTAGTAATGCTATAATTTTCATAACTATAGTAAGTTTAAT AGCCCCTTGGTTTGGGAGACAAGCAATAATTTGGATTGTAGATATGTCCTCTTTAGGAGCATCAGTTGCATATTTTTATG TTTCTTTTATAGTTTTAAAAGAATCTAAAAACACTAAAGATAAAATTTTAGCAGGAATAGGAGTGGTAATAAGTATAATT TTTATGCTTTTATTAATTTTACCTATTTCACCAGCAGCCTTATCTAAAGAGTCTTTAATAGCTTTAATAGTATGGTGTAT AATAGGTTTTATTGCATACTATAAAATTCAAAAGGATAATATAGAAGCATAA
Upstream 100 bases:
>100_bases AATAATAAATAGAGATAAAAAATAGTTTAAAAAGCTATAATTGGTTAATATAAAATAAAACTAATTATAGCTTTATTTTC TTAAATGAATGGAGATAATG
Downstream 100 bases:
>100_bases CATTTATTTTATGATAAATAAAACATATAAAGTTATTTAATTAATATTTAAAATAGAAAATATCATCTTGAAACAAACAT GAAAACAACCTAAGGTAAGT
Product: amino acid ABC transporter permease
Products: NA
Alternate protein names: Amino Acid Transporter; Cationic Amino Acid Transporter; Amino Acid Permease; Amino Acid Permease Family Protein; Amino Acid/Polyamine Transporter I; APC Family Transporter; Amino Acid Permease-Associated Protein; Cationic Amino Acid Transporter APC Family; Amino Acid Transporters; APC Family Amino Acid-Polyamine-Organocation Transporter; Amino Acid Permease RocC
Number of amino acids: Translated: 443; Mature: 443
Protein sequence:
>443_residues MKEIKLSRIDIFSIVLGAIIGWGSFMLPGTKFLKESGVINTFLGLFLGVICIIIIEKNYLIMMQTHDEEGGEFSFTYNNL GKKHGFIVGWFLTLAYFTMIPLNATAFPLVIKKIFGGILEFGYLYNVAGYNIYLGEILTSSIIIIAFAALNLNGIKKTSK VQNLIIFSLISMTFIVLVGMIIKGNRIDFINTYINKYSFDLSQIIKVFAITPFAFIGFDAIPQLSKELNFSKKKASRVAV ISLVMGALIYNILNIITALAYSPEQASSLEWAAGSAVLSILGKGAFFLLIIALTAAVWSGINGFMICSSKLLGSIANYKM LPSKMGKVNKNGVFSNAIIFITIVSLIAPWFGRQAIIWIVDMSSLGASVAYFYVSFIVLKESKNTKDKILAGIGVVISII FMLLLILPISPAALSKESLIALIVWCIIGFIAYYKIQKDNIEA
Sequences:
>Translated_443_residues MKEIKLSRIDIFSIVLGAIIGWGSFMLPGTKFLKESGVINTFLGLFLGVICIIIIEKNYLIMMQTHDEEGGEFSFTYNNL GKKHGFIVGWFLTLAYFTMIPLNATAFPLVIKKIFGGILEFGYLYNVAGYNIYLGEILTSSIIIIAFAALNLNGIKKTSK VQNLIIFSLISMTFIVLVGMIIKGNRIDFINTYINKYSFDLSQIIKVFAITPFAFIGFDAIPQLSKELNFSKKKASRVAV ISLVMGALIYNILNIITALAYSPEQASSLEWAAGSAVLSILGKGAFFLLIIALTAAVWSGINGFMICSSKLLGSIANYKM LPSKMGKVNKNGVFSNAIIFITIVSLIAPWFGRQAIIWIVDMSSLGASVAYFYVSFIVLKESKNTKDKILAGIGVVISII FMLLLILPISPAALSKESLIALIVWCIIGFIAYYKIQKDNIEA >Mature_443_residues MKEIKLSRIDIFSIVLGAIIGWGSFMLPGTKFLKESGVINTFLGLFLGVICIIIIEKNYLIMMQTHDEEGGEFSFTYNNL GKKHGFIVGWFLTLAYFTMIPLNATAFPLVIKKIFGGILEFGYLYNVAGYNIYLGEILTSSIIIIAFAALNLNGIKKTSK VQNLIIFSLISMTFIVLVGMIIKGNRIDFINTYINKYSFDLSQIIKVFAITPFAFIGFDAIPQLSKELNFSKKKASRVAV ISLVMGALIYNILNIITALAYSPEQASSLEWAAGSAVLSILGKGAFFLLIIALTAAVWSGINGFMICSSKLLGSIANYKM LPSKMGKVNKNGVFSNAIIFITIVSLIAPWFGRQAIIWIVDMSSLGASVAYFYVSFIVLKESKNTKDKILAGIGVVISII FMLLLILPISPAALSKESLIALIVWCIIGFIAYYKIQKDNIEA
Specific function: Unknown
COG id: COG0531
COG function: function code E; Amino acid transporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48705; Mature: 48705
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKEIKLSRIDIFSIVLGAIIGWGSFMLPGTKFLKESGVINTFLGLFLGVICIIIIEKNYL CCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEE IMMQTHDEEGGEFSFTYNNLGKKHGFIVGWFLTLAYFTMIPLNATAFPLVIKKIFGGILE EEEEECCCCCCEEEEEHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH FGYLYNVAGYNIYLGEILTSSIIIIAFAALNLNGIKKTSKVQNLIIFSLISMTFIVLVGM HHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IIKGNRIDFINTYINKYSFDLSQIIKVFAITPFAFIGFDAIPQLSKELNFSKKKASRVAV HHCCCCCHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH ISLVMGALIYNILNIITALAYSPEQASSLEWAAGSAVLSILGKGAFFLLIIALTAAVWSG HHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC INGFMICSSKLLGSIANYKMLPSKMGKVNKNGVFSNAIIFITIVSLIAPWFGRQAIIWIV CCHHEEEHHHHHHHHHCCHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE DMSSLGASVAYFYVSFIVLKESKNTKDKILAGIGVVISIIFMLLLILPISPAALSKESLI EHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHH ALIVWCIIGFIAYYKIQKDNIEA HHHHHHHHHHHHHHEEECCCCCC >Mature Secondary Structure MKEIKLSRIDIFSIVLGAIIGWGSFMLPGTKFLKESGVINTFLGLFLGVICIIIIEKNYL CCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEE IMMQTHDEEGGEFSFTYNNLGKKHGFIVGWFLTLAYFTMIPLNATAFPLVIKKIFGGILE EEEEECCCCCCEEEEEHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH FGYLYNVAGYNIYLGEILTSSIIIIAFAALNLNGIKKTSKVQNLIIFSLISMTFIVLVGM HHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IIKGNRIDFINTYINKYSFDLSQIIKVFAITPFAFIGFDAIPQLSKELNFSKKKASRVAV HHCCCCCHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH ISLVMGALIYNILNIITALAYSPEQASSLEWAAGSAVLSILGKGAFFLLIIALTAAVWSG HHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC INGFMICSSKLLGSIANYKMLPSKMGKVNKNGVFSNAIIFITIVSLIAPWFGRQAIIWIV CCHHEEEHHHHHHHHHCCHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE DMSSLGASVAYFYVSFIVLKESKNTKDKILAGIGVVISIIFMLLLILPISPAALSKESLI EHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHH ALIVWCIIGFIAYYKIQKDNIEA HHHHHHHHHHHHHHEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA