| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is nanI
Identifier: 18309707
GI number: 18309707
Start: 900997
End: 903081
Strand: Direct
Name: nanI
Synonym: CPE0725
Alternate gene names: NA
Gene position: 900997-903081 (Clockwise)
Preceding gene: 18309706
Following gene: 18309708
Centisome position: 29.72
GC content: 28.63
Gene sequence:
>2085_bases ATGAATTACAAAGGGATAACTTTAATTTTAACAGCTGCTATGGTTATAAGTGGTGGTAATTATGTATTGGTTAAAGGAAG TACTTTAGACTCAGGGAAAAATAATAGTGGGTATGAGATTAAAGTAAATAATAGTGAAAGTTTAAGTTCACTAGGAGAAT ATAAGGATATAAATTTAGAAAGTTCAAATGCTTCTAATATTACTTATGATTTAGAAAAATATAAAAATTTAGATGAAGGT ACTATTGTTGTAAGATTTAATTCTAAAGATTCTAAAATACAAAGCTTATTAGGAATAAGTAATAGCAAAACTAAAAATGG ATATTTTAATTTTTATGTTACTAATTCAAGAGTTGGTTTTGAGCTTAGAAATCAAAAAAATGAGGGAAATACACAAAGTG GAACTGAAAATCTAGTACATATGTATAAAGACGTTGCTTTAAATGATGGTGATAATACTGTTGCCTTAAAGATTGAAAAA AACAAAGGTTATAAGCTTTTCCTTAATGGAAAAATCATAAAAGAAGTTAAAGATACAAATACAAAGTTTTTAAATAATAT AGAAAATTTAGATAGTGCTTTTATTGGAAAAACTAATAGATATGGACAATCTAATGAATATAATTTTAAGGGCAATATAG GTTTTATGAATATATATAATGAACCTTTAGGCGATGATTATTTACTTAGTAAGACTGGAGAGACAAAAGCTAAAGAAGAA GTTCTTGTAGAGGGAGCTGTAAAGACAGAGCCAGTTGATTTATTTCATCCAGGATTTTTAAATTCTAGTAATTACAGAAT ACCAGCCTTATTTAAAACAAAAGAAGGAACTTTAATAGCTTCAATAGATGCAAGAAGACATGGTGGGGCCGATGCTCCTA ACAATGATATAGATACAGCAGTTAGAAGAAGTGAAGATGGAGGGAAAACTTGGGATGAAGGACAAATAATAATGGACTAT CCTGATAAATCCTCTGTTATAGATACAACTTTAATTCAAGATGATGAAACAGGAAGAATATTCTTGTTGGTAACTCATTT CCCTTCAAAATATGGTTTTTGGAATGCTGGATTAGGAAGTGGATTTAAAAATATTGATGGAAAAGAATATTTATGTCTTT ACGATTCATCAGGTAAAGAATTTACTGTAAGAGAAAATGTAGTATATGACAAAGATGGCAATAAAACAGAATATACAACA AATGCTTTAGGAGATTTATTTAAAAATGGAACTAAGATAGATAATATAAATTCTAGTACAGCACCTTTAAAAGCAAAAGG GACAAGCTATATAAATCTTGTATATAGTGATGATGATGGAAAGACTTGGAGTGAGCCACAAAATATTAATTTCCAAGTTA AAAAGGATTGGATGAAGTTTTTAGGAATAGCTCCAGGTAGAGGAATACAAATAAAAAATGGAGAACATAAAGGAAGAATA GTAGTTCCTGTTTACTATACAAATGAAAAAGGTAAACAATCTAGTGCTGTAATATATAGTGATGATAGTGGTAAGAATTG GACAATAGGAGAATCTCCAAATGATAATAGAAAATTAGAAAATGGAAAAATAATAAATTCTAAAACCTTATCAGATGATG CACCTCAATTAACTGAATGTCAAGTAGTAGAAATGCCAAATGGTCAACTAAAATTATTTATGAGAAATTTAAGTGGATAT TTAAATATTGCTACAAGTTTTGATGGGGGAGCTACTTGGGACGAGACAGTAGAGAAAGATACTAATGTTTTAGAGCCATA TTGCCAATTAAGTGTTATAAATTATAGTCAAAAGATAGATGGAAAGGATGCTGTTATCTTCTCAAATCCAAACGCAAGAA GTAGATCAAATGGTACTGTGAGAATTGGATTGATTAATCAAGTTGGAACATATGAAAATGGTGAACCTAAATATGAATTT GATTGGAAATATAATAAATTAGTTAAACCAGGGTATTATGCTTATTCTTGTTTAACAGAATTAAGCAATGGAAATATTGG ATTATTATATGAGGGTACACCAAGTGAAGAAATGTCTTATATTGAAATGAATTTAAAATATTTAGAGAGTGGAGCTAATA AATAA
Upstream 100 bases:
>100_bases AGTTACAAATACAATAATAAAAATTTTACTTCGTATGTCATAGTATTTTAAATTAATACTATTTCAAAATAATAAAAAAT TATTTATGGGAGGATGTAAA
Downstream 100 bases:
>100_bases GAAATTATTAAAAATATTATTTTATGGTTTGAAAGGGGTAAAAGATTATGAAAAAGATATGGAAGTATGGGGTACTACTT GCATTACCATTAGTTTTAGC
Product: exo-alpha-sialidase
Products: NA
Alternate protein names: Neuraminidase [H]
Number of amino acids: Translated: 694; Mature: 694
Protein sequence:
>694_residues MNYKGITLILTAAMVISGGNYVLVKGSTLDSGKNNSGYEIKVNNSESLSSLGEYKDINLESSNASNITYDLEKYKNLDEG TIVVRFNSKDSKIQSLLGISNSKTKNGYFNFYVTNSRVGFELRNQKNEGNTQSGTENLVHMYKDVALNDGDNTVALKIEK NKGYKLFLNGKIIKEVKDTNTKFLNNIENLDSAFIGKTNRYGQSNEYNFKGNIGFMNIYNEPLGDDYLLSKTGETKAKEE VLVEGAVKTEPVDLFHPGFLNSSNYRIPALFKTKEGTLIASIDARRHGGADAPNNDIDTAVRRSEDGGKTWDEGQIIMDY PDKSSVIDTTLIQDDETGRIFLLVTHFPSKYGFWNAGLGSGFKNIDGKEYLCLYDSSGKEFTVRENVVYDKDGNKTEYTT NALGDLFKNGTKIDNINSSTAPLKAKGTSYINLVYSDDDGKTWSEPQNINFQVKKDWMKFLGIAPGRGIQIKNGEHKGRI VVPVYYTNEKGKQSSAVIYSDDSGKNWTIGESPNDNRKLENGKIINSKTLSDDAPQLTECQVVEMPNGQLKLFMRNLSGY LNIATSFDGGATWDETVEKDTNVLEPYCQLSVINYSQKIDGKDAVIFSNPNARSRSNGTVRIGLINQVGTYENGEPKYEF DWKYNKLVKPGYYAYSCLTELSNGNIGLLYEGTPSEEMSYIEMNLKYLESGANK
Sequences:
>Translated_694_residues MNYKGITLILTAAMVISGGNYVLVKGSTLDSGKNNSGYEIKVNNSESLSSLGEYKDINLESSNASNITYDLEKYKNLDEG TIVVRFNSKDSKIQSLLGISNSKTKNGYFNFYVTNSRVGFELRNQKNEGNTQSGTENLVHMYKDVALNDGDNTVALKIEK NKGYKLFLNGKIIKEVKDTNTKFLNNIENLDSAFIGKTNRYGQSNEYNFKGNIGFMNIYNEPLGDDYLLSKTGETKAKEE VLVEGAVKTEPVDLFHPGFLNSSNYRIPALFKTKEGTLIASIDARRHGGADAPNNDIDTAVRRSEDGGKTWDEGQIIMDY PDKSSVIDTTLIQDDETGRIFLLVTHFPSKYGFWNAGLGSGFKNIDGKEYLCLYDSSGKEFTVRENVVYDKDGNKTEYTT NALGDLFKNGTKIDNINSSTAPLKAKGTSYINLVYSDDDGKTWSEPQNINFQVKKDWMKFLGIAPGRGIQIKNGEHKGRI VVPVYYTNEKGKQSSAVIYSDDSGKNWTIGESPNDNRKLENGKIINSKTLSDDAPQLTECQVVEMPNGQLKLFMRNLSGY LNIATSFDGGATWDETVEKDTNVLEPYCQLSVINYSQKIDGKDAVIFSNPNARSRSNGTVRIGLINQVGTYENGEPKYEF DWKYNKLVKPGYYAYSCLTELSNGNIGLLYEGTPSEEMSYIEMNLKYLESGANK >Mature_694_residues MNYKGITLILTAAMVISGGNYVLVKGSTLDSGKNNSGYEIKVNNSESLSSLGEYKDINLESSNASNITYDLEKYKNLDEG TIVVRFNSKDSKIQSLLGISNSKTKNGYFNFYVTNSRVGFELRNQKNEGNTQSGTENLVHMYKDVALNDGDNTVALKIEK NKGYKLFLNGKIIKEVKDTNTKFLNNIENLDSAFIGKTNRYGQSNEYNFKGNIGFMNIYNEPLGDDYLLSKTGETKAKEE VLVEGAVKTEPVDLFHPGFLNSSNYRIPALFKTKEGTLIASIDARRHGGADAPNNDIDTAVRRSEDGGKTWDEGQIIMDY PDKSSVIDTTLIQDDETGRIFLLVTHFPSKYGFWNAGLGSGFKNIDGKEYLCLYDSSGKEFTVRENVVYDKDGNKTEYTT NALGDLFKNGTKIDNINSSTAPLKAKGTSYINLVYSDDDGKTWSEPQNINFQVKKDWMKFLGIAPGRGIQIKNGEHKGRI VVPVYYTNEKGKQSSAVIYSDDSGKNWTIGESPNDNRKLENGKIINSKTLSDDAPQLTECQVVEMPNGQLKLFMRNLSGY LNIATSFDGGATWDETVEKDTNVLEPYCQLSVINYSQKIDGKDAVIFSNPNARSRSNGTVRIGLINQVGTYENGEPKYEF DWKYNKLVKPGYYAYSCLTELSNGNIGLLYEGTPSEEMSYIEMNLKYLESGANK
Specific function: Sialidases have been suggested to be pathogenic factors in microbial infections [H]
COG id: COG4409
COG function: function code G; Neuraminidase (sialidase)
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 F5/8 type C domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002860 - InterPro: IPR000421 - InterPro: IPR008985 - InterPro: IPR013320 - InterPro: IPR008979 - InterPro: IPR004124 - InterPro: IPR011040 [H]
Pfam domain/function: PF02012 BNR; PF00754 F5_F8_type_C; PF02973 Sialidase [H]
EC number: =3.2.1.18 [H]
Molecular weight: Translated: 77315; Mature: 77315
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYKGITLILTAAMVISGGNYVLVKGSTLDSGKNNSGYEIKVNNSESLSSLGEYKDINLE CCCCCEEHEEEEEHHEECCCEEEEECCCCCCCCCCCCEEEEECCCHHHHHCCCCEECEEC SSNASNITYDLEKYKNLDEGTIVVRFNSKDSKIQSLLGISNSKTKNGYFNFYVTNSRVGF CCCCCCEEEEHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCEEEEEEECCEEEE ELRNQKNEGNTQSGTENLVHMYKDVALNDGDNTVALKIEKNKGYKLFLNGKIIKEVKDTN EEECCCCCCCCCCCHHHHHHHHHHHEECCCCCEEEEEEECCCCEEEEECCEEEEHHHCCC TKFLNNIENLDSAFIGKTNRYGQSNEYNFKGNIGFMNIYNEPLGDDYLLSKTGETKAKEE HHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCEEEEEECCCCCCCCEEEECCCCCCCHHH VLVEGAVKTEPVDLFHPGFLNSSNYRIPALFKTKEGTLIASIDARRHGGADAPNNDIDTA HEEECCCCCCCCEEECCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHH VRRSEDGGKTWDEGQIIMDYPDKSSVIDTTLIQDDETGRIFLLVTHFPSKYGFWNAGLGS HHCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCEEECCCCC GFKNIDGKEYLCLYDSSGKEFTVRENVVYDKDGNKTEYTTNALGDLFKNGTKIDNINSST CCCCCCCCEEEEEECCCCCEEEEECCEEECCCCCCCEEEHHHHHHHHHCCCEECCCCCCC APLKAKGTSYINLVYSDDDGKTWSEPQNINFQVKKDWMKFLGIAPGRGIQIKNGEHKGRI CCEEECCCEEEEEEEECCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCEEEECCCCCCEE VVPVYYTNEKGKQSSAVIYSDDSGKNWTIGESPNDNRKLENGKIINSKTLSDDAPQLTEC EEEEEEECCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCE QVVEMPNGQLKLFMRNLSGYLNIATSFDGGATWDETVEKDTNVLEPYCQLSVINYSQKID EEEECCCCCEEEEEECCCCEEEEEEECCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCC GKDAVIFSNPNARSRSNGTVRIGLINQVGTYENGEPKYEFDWKYNKLVKPGYYAYSCLTE CCCEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHH LSNGNIGLLYEGTPSEEMSYIEMNLKYLESGANK HCCCCEEEEECCCCCCCEEEEEEEHHHHHCCCCC >Mature Secondary Structure MNYKGITLILTAAMVISGGNYVLVKGSTLDSGKNNSGYEIKVNNSESLSSLGEYKDINLE CCCCCEEHEEEEEHHEECCCEEEEECCCCCCCCCCCCEEEEECCCHHHHHCCCCEECEEC SSNASNITYDLEKYKNLDEGTIVVRFNSKDSKIQSLLGISNSKTKNGYFNFYVTNSRVGF CCCCCCEEEEHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCEEEEEEECCEEEE ELRNQKNEGNTQSGTENLVHMYKDVALNDGDNTVALKIEKNKGYKLFLNGKIIKEVKDTN EEECCCCCCCCCCCHHHHHHHHHHHEECCCCCEEEEEEECCCCEEEEECCEEEEHHHCCC TKFLNNIENLDSAFIGKTNRYGQSNEYNFKGNIGFMNIYNEPLGDDYLLSKTGETKAKEE HHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCEEEEEECCCCCCCCEEEECCCCCCCHHH VLVEGAVKTEPVDLFHPGFLNSSNYRIPALFKTKEGTLIASIDARRHGGADAPNNDIDTA HEEECCCCCCCCEEECCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHH VRRSEDGGKTWDEGQIIMDYPDKSSVIDTTLIQDDETGRIFLLVTHFPSKYGFWNAGLGS HHCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCEEECCCCC GFKNIDGKEYLCLYDSSGKEFTVRENVVYDKDGNKTEYTTNALGDLFKNGTKIDNINSST CCCCCCCCEEEEEECCCCCEEEEECCEEECCCCCCCEEEHHHHHHHHHCCCEECCCCCCC APLKAKGTSYINLVYSDDDGKTWSEPQNINFQVKKDWMKFLGIAPGRGIQIKNGEHKGRI CCEEECCCEEEEEEEECCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCEEEECCCCCCEE VVPVYYTNEKGKQSSAVIYSDDSGKNWTIGESPNDNRKLENGKIINSKTLSDDAPQLTEC EEEEEEECCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCE QVVEMPNGQLKLFMRNLSGYLNIATSFDGGATWDETVEKDTNVLEPYCQLSVINYSQKID EEEECCCCCEEEEEECCCCEEEEEEECCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCC GKDAVIFSNPNARSRSNGTVRIGLINQVGTYENGEPKYEFDWKYNKLVKPGYYAYSCLTE CCCEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHH LSNGNIGLLYEGTPSEEMSYIEMNLKYLESGANK HCCCCEEEEECCCCCCCEEEEEEEHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2034213 [H]