Click here to switch to the map view.

The map label for this gene is 17548143

Identifier: 17548143

GI number: 17548143

Start: 3698062

End: 3699222

Strand: Reverse

Name: 17548143

Synonym: RSc3426

Alternate gene names: NA

Gene position: 3699222-3698062 (Counterclockwise)

Preceding gene: 17548144

Following gene: 17548142

Centisome position: 99.54

GC content: 58.91

Gene sequence:

>1161_bases
GTGAGCGCATTGCTTGCGGCTGCACGGCTCGGCGACCCGGTTGCACATACCGCGTCGAAGGGCTGGATGATGGCGGGCCT
GATTGCCGGTGCGCTCATCGGTGCTGCTGCCGTGGTCGTGACGGGCGGTGCGGCACTGACCTTGGTGGCAGCCGCAGCAG
CCGGTGCCGCAGCCGGCGGCGGTCTTGGCGAAGTGCTTGGCACGATGTCCTGGGCGCCGCGGCATGTCACGGGAAGCCTG
ATATCGGGATCGTTCAACGTCTTCGTCAACGGTCGACCAGCAGTCCGTGCCCATCTAAGCCAGGGAATCTGCAGCGATCA
TCCCGGCTCACCCCAGCTTGTCGCTCAGGGCTCGTCGACGGTCTTCATCAACGGTCAGCCTGCAGCCCGCATGGAGGACA
TGCTGACGTGCAGTGCGGTGATCAGTGCCGGGTCACCGGACGTCTTTATCGGCGGCGCCACCGTGACCACGGATGACATC
AGTCCGGAGATTCCGGGGTGGGTCAACTGGACGATGCTGGCTGTCGGTGTAGCCGCTGCGGCGGTTCTTGCAGGCCCTCT
GGTCGCCGCCTTGGGAACCGTCGGGGGTATTGCTGGTGGTGAAGCGGGATCGTGGCTCGGGGGCAAGTTCTTTGGAGACG
GGTCAGACGGGCAGAAATGGTCGATGCTCGGTGGTAGCTTGCTGGGAGGGCTAGCGGGAGCGAAGGGTGCCAATGCCTGG
TCCAAAACCACGGGAACAATATCTGCCGAGCCAAATAGATTCTTCGGAGCAAGGGGACCAGCCAGTGGCCGTGAGTTCGA
TCCAACACGAGCCGGCGGGCCCATTCGCCAGTTGAGTACAGACAGCTTTCAGATTACACACGAAGGAATCGATGCTGTTC
AAAGGCACGTTTCTAGATTTGGCCAAGACAACGCGAATGACTTTATGGTTAATCGACTTAGAAACATAGCAGATGGAAAT
TCTGAGGCGACTCAATACGATAAAAATTTCTATACTCATGAGCTGGCCGAATTCGAGCGATACACGAATCTTGGCTGGGA
GGTCGGGCAGCCGACCGACCCAATGGAGGCTTATGATTTGTGGAACAATACACATACTGCAACATTGGAAGATTTCGGCC
TGAAGGATGGCCAACTTTATCACCCAGACGCACCACAATGA

Upstream 100 bases:

>100_bases
TTGCGGCGGTGAAGGGCATGGCGAGTCTGCCAACCATCGAGGCCGTCCAGGCGGCACTGGTCGGCGTAGTGGACAACCCG
CGCTGAGCAGGAGAACAAGC

Downstream 100 bases:

>100_bases
GCGAAGACATTAAAATCACCATACTGAAATTGCTTTCAGCTTCAGAAAGAAATTGGAACTGGTACACGCTTGATCGCGCG
CTCGCTGCGCAAGGGCGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: YD Repeat Protein; YD Repeat-Containing Protein; Rhs-Family Protein; PAAR Repeat-Containing Protein; Rhs Core Protein With Extension; Rhs-Related Protein; RHS Protein; RHS/YD Repeat-Containing Protein; S-Type Pyocin Domain-Containing Protein; RHS-Family Protein; RHS Family Protein; Hcp Family T6SS; Colicin/Pyosin Nuclease Family Protein; S-Type Pyocin; RHS-Like Protein; PAAR Motif-Containing Protein; Superfamily II DNA Helicase; Rhs Core Protein; S-Type Pyocin Family Protein

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MSALLAAARLGDPVAHTASKGWMMAGLIAGALIGAAAVVVTGGAALTLVAAAAAGAAAGGGLGEVLGTMSWAPRHVTGSL
ISGSFNVFVNGRPAVRAHLSQGICSDHPGSPQLVAQGSSTVFINGQPAARMEDMLTCSAVISAGSPDVFIGGATVTTDDI
SPEIPGWVNWTMLAVGVAAAAVLAGPLVAALGTVGGIAGGEAGSWLGGKFFGDGSDGQKWSMLGGSLLGGLAGAKGANAW
SKTTGTISAEPNRFFGARGPASGREFDPTRAGGPIRQLSTDSFQITHEGIDAVQRHVSRFGQDNANDFMVNRLRNIADGN
SEATQYDKNFYTHELAEFERYTNLGWEVGQPTDPMEAYDLWNNTHTATLEDFGLKDGQLYHPDAPQ

Sequences:

>Translated_386_residues
MSALLAAARLGDPVAHTASKGWMMAGLIAGALIGAAAVVVTGGAALTLVAAAAAGAAAGGGLGEVLGTMSWAPRHVTGSL
ISGSFNVFVNGRPAVRAHLSQGICSDHPGSPQLVAQGSSTVFINGQPAARMEDMLTCSAVISAGSPDVFIGGATVTTDDI
SPEIPGWVNWTMLAVGVAAAAVLAGPLVAALGTVGGIAGGEAGSWLGGKFFGDGSDGQKWSMLGGSLLGGLAGAKGANAW
SKTTGTISAEPNRFFGARGPASGREFDPTRAGGPIRQLSTDSFQITHEGIDAVQRHVSRFGQDNANDFMVNRLRNIADGN
SEATQYDKNFYTHELAEFERYTNLGWEVGQPTDPMEAYDLWNNTHTATLEDFGLKDGQLYHPDAPQ
>Mature_385_residues
SALLAAARLGDPVAHTASKGWMMAGLIAGALIGAAAVVVTGGAALTLVAAAAAGAAAGGGLGEVLGTMSWAPRHVTGSLI
SGSFNVFVNGRPAVRAHLSQGICSDHPGSPQLVAQGSSTVFINGQPAARMEDMLTCSAVISAGSPDVFIGGATVTTDDIS
PEIPGWVNWTMLAVGVAAAAVLAGPLVAALGTVGGIAGGEAGSWLGGKFFGDGSDGQKWSMLGGSLLGGLAGAKGANAWS
KTTGTISAEPNRFFGARGPASGREFDPTRAGGPIRQLSTDSFQITHEGIDAVQRHVSRFGQDNANDFMVNRLRNIADGNS
EATQYDKNFYTHELAEFERYTNLGWEVGQPTDPMEAYDLWNNTHTATLEDFGLKDGQLYHPDAPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39554; Mature: 39422

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALLAAARLGDPVAHTASKGWMMAGLIAGALIGAAAVVVTGGAALTLVAAAAAGAAAGG
CCHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
GLGEVLGTMSWAPRHVTGSLISGSFNVFVNGRPAVRAHLSQGICSDHPGSPQLVAQGSST
CHHHHHHHCCCCCCHHCCCEECCCEEEEECCCHHHHHHHHCCCCCCCCCCCCEEECCCCE
VFINGQPAARMEDMLTCSAVISAGSPDVFIGGATVTTDDISPEIPGWVNWTMLAVGVAAA
EEECCCCHHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHH
AVLAGPLVAALGTVGGIAGGEAGSWLGGKFFGDGSDGQKWSMLGGSLLGGLAGAKGANAW
HHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
SKTTGTISAEPNRFFGARGPASGREFDPTRAGGPIRQLSTDSFQITHEGIDAVQRHVSRF
CCCCCEEECCCCCEECCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEHHHHHHHHHHHHHH
GQDNANDFMVNRLRNIADGNSEATQYDKNFYTHELAEFERYTNLGWEVGQPTDPMEAYDL
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
WNNTHTATLEDFGLKDGQLYHPDAPQ
CCCCCEEEHHHCCCCCCEEECCCCCC
>Mature Secondary Structure 
SALLAAARLGDPVAHTASKGWMMAGLIAGALIGAAAVVVTGGAALTLVAAAAAGAAAGG
CHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
GLGEVLGTMSWAPRHVTGSLISGSFNVFVNGRPAVRAHLSQGICSDHPGSPQLVAQGSST
CHHHHHHHCCCCCCHHCCCEECCCEEEEECCCHHHHHHHHCCCCCCCCCCCCEEECCCCE
VFINGQPAARMEDMLTCSAVISAGSPDVFIGGATVTTDDISPEIPGWVNWTMLAVGVAAA
EEECCCCHHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHH
AVLAGPLVAALGTVGGIAGGEAGSWLGGKFFGDGSDGQKWSMLGGSLLGGLAGAKGANAW
HHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
SKTTGTISAEPNRFFGARGPASGREFDPTRAGGPIRQLSTDSFQITHEGIDAVQRHVSRF
CCCCCEEECCCCCEECCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEHHHHHHHHHHHHHH
GQDNANDFMVNRLRNIADGNSEATQYDKNFYTHELAEFERYTNLGWEVGQPTDPMEAYDL
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
WNNTHTATLEDFGLKDGQLYHPDAPQ
CCCCCEEEHHHCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA