| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17548075
Identifier: 17548075
GI number: 17548075
Start: 3617178
End: 3617717
Strand: Reverse
Name: 17548075
Synonym: RSc3358
Alternate gene names: NA
Gene position: 3617717-3617178 (Counterclockwise)
Preceding gene: 17548079
Following gene: 17548074
Centisome position: 97.34
GC content: 64.63
Gene sequence:
>540_bases ATGCCACGCTCTTCCGCTGCCGCCAAAGATTCGGACGCCCATCAGCCGACCCCGCCCGAAGCGGCCGGACTGCGCCGCCG CGACCGCATCGCCGTGCGCGAATCGGGTGTGCACGGACGCGGCGTCTACGCGGTGGCGGCGATCGCCAAGGGCAAAAAGA TCATCGAATACAAGGGCGAGCACATTTCGTGGAAGGAAGCGTTGCGCCGTCACCCGCATGATCCGGACGACCCCAACCAC ACCTTCTATTTCAGCCTGGAAGACGGCAGCGTGATCGACGCCAAGTACGGCGGCAATCGCGCGCGCTGGATCAACCATGC CTGCAAGCCGAACTGCGAGGCGCGCGAGAAGGACGGCCGTGTCTTCATCCACGCGCTGCGCGATATCGACGCGGGCGAGG AGCTGTTCTACGACTACGGGCTGGTGATCGAAGGGCGCCAGACCAAGGCGCTCAAGGCACAGTTCGCCTGCCATTGCGGC GCGAAGAAGTGCCGCGGCACCATGCTCGCACCGCCCGAGAAGAAGGAAAAGAAGCAGTAG
Upstream 100 bases:
>100_bases AGCCGCGCGGCAGGGCGGGGACGACGTGTCGGGATGCCATGCTTTTGGTGTAGGCTCACGGCTTCGCTGACCGATGTTCC CGCCTTTCCTCCGCTGCCCC
Downstream 100 bases:
>100_bases GACGCCGGTCGCCGTTCAGCCACCGGTCATCAGCAGGATGCGCATGGTGTGGTGAAAGGAGGCGGTGGGCCTGGCCTCGG GCGCGGCGCTACAATGCCCG
Product: hypothetical protein
Products: NA
Alternate protein names: SET Domain-Containing Protein; SET Domain Protein; Set Domain Protein; Histone-Lysine N-Methyltransferase; HistoNe-Lysine N-Methyltransferase H3 Lysine-4 Specific; Setd1a Protein; Nuclear Protein Set; Zinc Finger Protein
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MPRSSAAAKDSDAHQPTPPEAAGLRRRDRIAVRESGVHGRGVYAVAAIAKGKKIIEYKGEHISWKEALRRHPHDPDDPNH TFYFSLEDGSVIDAKYGGNRARWINHACKPNCEAREKDGRVFIHALRDIDAGEELFYDYGLVIEGRQTKALKAQFACHCG AKKCRGTMLAPPEKKEKKQ
Sequences:
>Translated_179_residues MPRSSAAAKDSDAHQPTPPEAAGLRRRDRIAVRESGVHGRGVYAVAAIAKGKKIIEYKGEHISWKEALRRHPHDPDDPNH TFYFSLEDGSVIDAKYGGNRARWINHACKPNCEAREKDGRVFIHALRDIDAGEELFYDYGLVIEGRQTKALKAQFACHCG AKKCRGTMLAPPEKKEKKQ >Mature_178_residues PRSSAAAKDSDAHQPTPPEAAGLRRRDRIAVRESGVHGRGVYAVAAIAKGKKIIEYKGEHISWKEALRRHPHDPDDPNHT FYFSLEDGSVIDAKYGGNRARWINHACKPNCEAREKDGRVFIHALRDIDAGEELFYDYGLVIEGRQTKALKAQFACHCGA KKCRGTMLAPPEKKEKKQ
Specific function: Unknown
COG id: COG2940
COG function: function code R; Proteins containing SET domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI56550039, Length=166, Percent_Identity=35.5421686746988, Blast_Score=94, Evalue=6e-20, Organism=Homo sapiens, GI7662046, Length=143, Percent_Identity=37.7622377622378, Blast_Score=94, Evalue=7e-20, Organism=Homo sapiens, GI55741677, Length=148, Percent_Identity=30.4054054054054, Blast_Score=83, Evalue=1e-16, Organism=Homo sapiens, GI19913358, Length=136, Percent_Identity=36.0294117647059, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI19913350, Length=136, Percent_Identity=36.0294117647059, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI19913348, Length=136, Percent_Identity=36.0294117647059, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI109633019, Length=136, Percent_Identity=36.0294117647059, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI91718902, Length=146, Percent_Identity=35.6164383561644, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI210032580, Length=139, Percent_Identity=33.0935251798561, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI27477095, Length=157, Percent_Identity=33.1210191082803, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI110349788, Length=134, Percent_Identity=35.8208955223881, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI13699811, Length=139, Percent_Identity=35.2517985611511, Blast_Score=77, Evalue=8e-15, Organism=Homo sapiens, GI19923586, Length=142, Percent_Identity=35.2112676056338, Blast_Score=72, Evalue=2e-13, Organism=Homo sapiens, GI148762969, Length=146, Percent_Identity=35.6164383561644, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI21361095, Length=109, Percent_Identity=41.2844036697248, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI23510384, Length=109, Percent_Identity=41.2844036697248, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI156142197, Length=147, Percent_Identity=36.0544217687075, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI156142199, Length=147, Percent_Identity=36.0544217687075, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI19923202, Length=109, Percent_Identity=42.2018348623853, Blast_Score=70, Evalue=9e-13, Organism=Homo sapiens, GI224465233, Length=152, Percent_Identity=33.5526315789474, Blast_Score=69, Evalue=2e-12, Organism=Homo sapiens, GI4507321, Length=172, Percent_Identity=29.6511627906977, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI13375930, Length=155, Percent_Identity=30.3225806451613, Blast_Score=67, Evalue=9e-12, Organism=Homo sapiens, GI301171597, Length=155, Percent_Identity=30.3225806451613, Blast_Score=67, Evalue=9e-12, Organism=Homo sapiens, GI301171588, Length=155, Percent_Identity=30.3225806451613, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI197313748, Length=135, Percent_Identity=29.6296296296296, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17552318, Length=148, Percent_Identity=36.4864864864865, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17552316, Length=148, Percent_Identity=36.4864864864865, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17552320, Length=148, Percent_Identity=36.4864864864865, Blast_Score=90, Evalue=5e-19, Organism=Caenorhabditis elegans, GI193210440, Length=152, Percent_Identity=38.1578947368421, Blast_Score=83, Evalue=8e-17, Organism=Caenorhabditis elegans, GI25148426, Length=138, Percent_Identity=39.1304347826087, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI25148423, Length=138, Percent_Identity=39.1304347826087, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17565204, Length=157, Percent_Identity=31.8471337579618, Blast_Score=71, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193202392, Length=145, Percent_Identity=34.4827586206897, Blast_Score=70, Evalue=5e-13, Organism=Caenorhabditis elegans, GI71993684, Length=140, Percent_Identity=32.8571428571429, Blast_Score=70, Evalue=6e-13, Organism=Caenorhabditis elegans, GI25141373, Length=145, Percent_Identity=34.4827586206897, Blast_Score=70, Evalue=6e-13, Organism=Caenorhabditis elegans, GI71988186, Length=138, Percent_Identity=37.6811594202899, Blast_Score=67, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6321911, Length=149, Percent_Identity=38.255033557047, Blast_Score=93, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6322293, Length=142, Percent_Identity=34.5070422535211, Blast_Score=62, Evalue=3e-11, Organism=Drosophila melanogaster, GI62472551, Length=143, Percent_Identity=37.0629370629371, Blast_Score=94, Evalue=5e-20, Organism=Drosophila melanogaster, GI17136558, Length=143, Percent_Identity=37.0629370629371, Blast_Score=94, Evalue=5e-20, Organism=Drosophila melanogaster, GI19550181, Length=143, Percent_Identity=37.0629370629371, Blast_Score=94, Evalue=5e-20, Organism=Drosophila melanogaster, GI19550184, Length=143, Percent_Identity=37.0629370629371, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI17136556, Length=143, Percent_Identity=37.0629370629371, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI24639197, Length=146, Percent_Identity=36.986301369863, Blast_Score=87, Evalue=6e-18, Organism=Drosophila melanogaster, GI28571451, Length=146, Percent_Identity=36.986301369863, Blast_Score=87, Evalue=6e-18, Organism=Drosophila melanogaster, GI17737643, Length=138, Percent_Identity=34.7826086956522, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI24641786, Length=146, Percent_Identity=34.2465753424658, Blast_Score=77, Evalue=4e-15, Organism=Drosophila melanogaster, GI281360813, Length=146, Percent_Identity=34.2465753424658, Blast_Score=77, Evalue=5e-15, Organism=Drosophila melanogaster, GI24650756, Length=149, Percent_Identity=35.5704697986577, Blast_Score=76, Evalue=9e-15, Organism=Drosophila melanogaster, GI18543183, Length=151, Percent_Identity=35.0993377483444, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI161078181, Length=157, Percent_Identity=35.031847133758, Blast_Score=70, Evalue=6e-13, Organism=Drosophila melanogaster, GI221331070, Length=109, Percent_Identity=40.3669724770642, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24662251, Length=109, Percent_Identity=40.3669724770642, Blast_Score=69, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20031; Mature: 19900
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: PS50280 SET ; PS50868 POST_SET
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRSSAAAKDSDAHQPTPPEAAGLRRRDRIAVRESGVHGRGVYAVAAIAKGKKIIEYKGE CCCCCCCCCCCCCCCCCCCHHHCCCCHHCEEEECCCCCCCCCEEEEEHHCCCEEEEECCC HISWKEALRRHPHDPDDPNHTFYFSLEDGSVIDAKYGGNRARWINHACKPNCEAREKDGR CCCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCE VFIHALRDIDAGEELFYDYGLVIEGRQTKALKAQFACHCGAKKCRGTMLAPPEKKEKKQ EEEEEECCCCCCHHHEEECCEEEECCCCHHHHHHHHHHCCHHHHCCCCCCCCCHHCCCC >Mature Secondary Structure PRSSAAAKDSDAHQPTPPEAAGLRRRDRIAVRESGVHGRGVYAVAAIAKGKKIIEYKGE CCCCCCCCCCCCCCCCCCHHHCCCCHHCEEEECCCCCCCCCEEEEEHHCCCEEEEECCC HISWKEALRRHPHDPDDPNHTFYFSLEDGSVIDAKYGGNRARWINHACKPNCEAREKDGR CCCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCE VFIHALRDIDAGEELFYDYGLVIEGRQTKALKAQFACHCGAKKCRGTMLAPPEKKEKKQ EEEEEECCCCCCHHHEEECCEEEECCCCHHHHHHHHHHCCHHHHCCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA