Click here to switch to the map view.

The map label for this gene is ynbC [H]

Identifier: 17548063

GI number: 17548063

Start: 3607186

End: 3608046

Strand: Reverse

Name: ynbC [H]

Synonym: RSc3346

Alternate gene names: 17548063

Gene position: 3608046-3607186 (Counterclockwise)

Preceding gene: 17548064

Following gene: 17548062

Centisome position: 97.08

GC content: 71.43

Gene sequence:

>861_bases
ATGACGCAAGCCCCCGCCACGGTCGATGCGCTGGAGACGCGCCAGCGGATGAAGGATGGCACCGAGCTGTTCGTGCGGAC
CTGGCTGCCGGCGCCCGAGGCGGGTGAGCCCCGCGGCACCGTCATCCTCGTGCATGGCATGGCCGAGCACAGCGGCCGGT
ATCCGCATGTGGCGCAGGTGCTGTGCGAGCTCGGCCTGCGCGTGCGCGCCTTCGATCTGCGCGGCCACGGCAGGAGCGGC
GGCCCGCGCATGGCGCTCGACGCGCCCGACAACTACCTCACCGATCTCGCGGAAATTCTCGATGCCGTCGTCGCCGAGTG
GAACGAGATGCCGTTCGTGCTCGGCCACAGCATGGGCGGGCTGATCGTCGCGCGCTTCGCCACCGCGCGCGTGCGGCCGG
TGCGCGGCGTGCTGCTGTCGTCGCCGGCGCTGCGGCTCAAGCTGCCGCCCGGCGCCAATGCCGTGCTCGGGCTGCTCAGC
GCGCTGGCGCCGAAGCTGCCGGTGCCCAATCCCGTCGATCCTGCCAGGCTGTCGCATGATCCGTCGGTGGGCGCCGCGTA
TCGGGCGGATCCGCAGGTGCAGAAGACCATCAGTGCGTCGGTGCTGGCGTTCATGCTCAACGCCATCACCCAGGCGCAGC
AGGACGCGCCCCGGCTGGAGGCGCCCATGTTGCTGCTGGCGGGCGGGGCGGACACCATCGTCGATCCTTCGGGCAGCCGG
GATTTCTGCGCCGGCGCGCCGGAGGACCTGCGCACGCTGGCCTGGTTCGAGACCGCGTATCACGAGCTGTTCAACGAGGC
CGAGCCGATGCGCGGTGAAGCGTTCGGGACGATGCGGGCGTGGCTGGCCGGGCGGATCTGA

Upstream 100 bases:

>100_bases
CCTGCTGCGATGCAGCGCTGCCCGATCCGGACCGACACGGCTGACCATCGCGGCGCGCGGCGTCTATGCCACAATCAGGC
AACCCAACGAGGAGACGCCC

Downstream 100 bases:

>100_bases
GCCCGGGGGGGCCGGGCCACCGGCGATCGGACAAGAACAAAACACCCAAGAGCAGGCAGGAGACATGGAGACCTACGACT
ACATCATCATCGGCGCGGGC

Product: lysophospholipase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MTQAPATVDALETRQRMKDGTELFVRTWLPAPEAGEPRGTVILVHGMAEHSGRYPHVAQVLCELGLRVRAFDLRGHGRSG
GPRMALDAPDNYLTDLAEILDAVVAEWNEMPFVLGHSMGGLIVARFATARVRPVRGVLLSSPALRLKLPPGANAVLGLLS
ALAPKLPVPNPVDPARLSHDPSVGAAYRADPQVQKTISASVLAFMLNAITQAQQDAPRLEAPMLLLAGGADTIVDPSGSR
DFCAGAPEDLRTLAWFETAYHELFNEAEPMRGEAFGTMRAWLAGRI

Sequences:

>Translated_286_residues
MTQAPATVDALETRQRMKDGTELFVRTWLPAPEAGEPRGTVILVHGMAEHSGRYPHVAQVLCELGLRVRAFDLRGHGRSG
GPRMALDAPDNYLTDLAEILDAVVAEWNEMPFVLGHSMGGLIVARFATARVRPVRGVLLSSPALRLKLPPGANAVLGLLS
ALAPKLPVPNPVDPARLSHDPSVGAAYRADPQVQKTISASVLAFMLNAITQAQQDAPRLEAPMLLLAGGADTIVDPSGSR
DFCAGAPEDLRTLAWFETAYHELFNEAEPMRGEAFGTMRAWLAGRI
>Mature_285_residues
TQAPATVDALETRQRMKDGTELFVRTWLPAPEAGEPRGTVILVHGMAEHSGRYPHVAQVLCELGLRVRAFDLRGHGRSGG
PRMALDAPDNYLTDLAEILDAVVAEWNEMPFVLGHSMGGLIVARFATARVRPVRGVLLSSPALRLKLPPGANAVLGLLSA
LAPKLPVPNPVDPARLSHDPSVGAAYRADPQVQKTISASVLAFMLNAITQAQQDAPRLEAPMLLLAGGADTIVDPSGSRD
FCAGAPEDLRTLAWFETAYHELFNEAEPMRGEAFGTMRAWLAGRI

Specific function: Unknown

COG id: COG2267

COG function: function code I; Lysophospholipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI51242953, Length=273, Percent_Identity=32.2344322344322, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI6005786, Length=273, Percent_Identity=32.2344322344322, Blast_Score=136, Evalue=2e-32,
Organism=Escherichia coli, GI1787678, Length=269, Percent_Identity=28.996282527881, Blast_Score=101, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022742
- InterPro:   IPR022744 [H]

Pfam domain/function: PF12146 Hydrolase_4; PF12147 Hydrolase_5 [H]

EC number: NA

Molecular weight: Translated: 30735; Mature: 30604

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQAPATVDALETRQRMKDGTELFVRTWLPAPEAGEPRGTVILVHGMAEHSGRYPHVAQV
CCCCCCHHHHHHHHHHHHCCHHEEHHCCCCCCCCCCCCCCEEEEECCHHHCCCCCHHHHH
LCELGLRVRAFDLRGHGRSGGPRMALDAPDNYLTDLAEILDAVVAEWNEMPFVLGHSMGG
HHHCCCEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCH
LIVARFATARVRPVRGVLLSSPALRLKLPPGANAVLGLLSALAPKLPVPNPVDPARLSHD
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCC
PSVGAAYRADPQVQKTISASVLAFMLNAITQAQQDAPRLEAPMLLLAGGADTIVDPSGSR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEECCCCCC
DFCAGAPEDLRTLAWFETAYHELFNEAEPMRGEAFGTMRAWLAGRI
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
TQAPATVDALETRQRMKDGTELFVRTWLPAPEAGEPRGTVILVHGMAEHSGRYPHVAQV
CCCCCHHHHHHHHHHHHCCHHEEHHCCCCCCCCCCCCCCEEEEECCHHHCCCCCHHHHH
LCELGLRVRAFDLRGHGRSGGPRMALDAPDNYLTDLAEILDAVVAEWNEMPFVLGHSMGG
HHHCCCEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCH
LIVARFATARVRPVRGVLLSSPALRLKLPPGANAVLGLLSALAPKLPVPNPVDPARLSHD
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCC
PSVGAAYRADPQVQKTISASVLAFMLNAITQAQQDAPRLEAPMLLLAGGADTIVDPSGSR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEECCCCCC
DFCAGAPEDLRTLAWFETAYHELFNEAEPMRGEAFGTMRAWLAGRI
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]