| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is yvyE [H]
Identifier: 17547994
GI number: 17547994
Start: 3528311
End: 3528898
Strand: Direct
Name: yvyE [H]
Synonym: RSc3277
Alternate gene names: 17547994
Gene position: 3528311-3528898 (Clockwise)
Preceding gene: 17547993
Following gene: 17547998
Centisome position: 94.94
GC content: 73.98
Gene sequence:
>588_bases GTGCCGACCTACACCTTGCGCGCGCCGGTCAGGGCCGAGCTGGAGATCCGGAAAAGCCGCTTCATCGGGCTGGCCGTGCC GGTCGAGGACCGCGCCGCCGCCATGGACGTGATCGCCCGGCTGCGCGCCGAGCACCCCGCCGCCACGCACGTCTGCTGGG CCCTGCTGGCCGGCGGGCAATCCGGCATGTCGGACGACGGCGAGCCCTCCGGCACCGCCGGCCGGCCCATCCTCGAAGTG CTGCGCCATCACGATCTGGACGGCACGCTGGGCGCGGTGGTGCGCTACTTCGGCGGGGTCAAGCTGGGCGCCGGCGGACT GGTGCGCGCCTACACCGATGCCATCGCCACCGCGCTGATGGGGGCGGAGCGCGTCGAGCGCATCGCCCGCACCACGCTCA CGCTCGTCACCGACTACGCCGACGAGGCGCGCATCCGCCGCTGGATCGACGATGCCGGCTATGCGCTGGTCGATGCCGCC TACGATGCGGGCGTCACGCTGGCGGTGCGCCTGCCCGTGACGGACGAGGCCGCCGCGCGCACGACGCTGCGGGACCTGAC GCAGGGGCGCGTGGTCATCCCGGACTGA
Upstream 100 bases:
>100_bases ATGGAAGAGCACATGGCGCACACCGAGGCCTCGCTGCATTTCACGCTCACGCCCAGCGGCGAGACCGATCTCATCACCGC CCTGCTGGCCTGAGCGCGCG
Downstream 100 bases:
>100_bases TGGCCCAGCCGTGCCCGCGCCGGGCCGCCATGCCGACGGCTCAGAAGTCGAGCTGCGCGGGCAGGATCCCCAGCGCGGCG GCGATCCTGTCGCGCGAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 195; Mature: 194
Protein sequence:
>195_residues MPTYTLRAPVRAELEIRKSRFIGLAVPVEDRAAAMDVIARLRAEHPAATHVCWALLAGGQSGMSDDGEPSGTAGRPILEV LRHHDLDGTLGAVVRYFGGVKLGAGGLVRAYTDAIATALMGAERVERIARTTLTLVTDYADEARIRRWIDDAGYALVDAA YDAGVTLAVRLPVTDEAAARTTLRDLTQGRVVIPD
Sequences:
>Translated_195_residues MPTYTLRAPVRAELEIRKSRFIGLAVPVEDRAAAMDVIARLRAEHPAATHVCWALLAGGQSGMSDDGEPSGTAGRPILEV LRHHDLDGTLGAVVRYFGGVKLGAGGLVRAYTDAIATALMGAERVERIARTTLTLVTDYADEARIRRWIDDAGYALVDAA YDAGVTLAVRLPVTDEAAARTTLRDLTQGRVVIPD >Mature_194_residues PTYTLRAPVRAELEIRKSRFIGLAVPVEDRAAAMDVIARLRAEHPAATHVCWALLAGGQSGMSDDGEPSGTAGRPILEVL RHHDLDGTLGAVVRYFGGVKLGAGGLVRAYTDAIATALMGAERVERIARTTLTLVTDYADEARIRRWIDDAGYALVDAAY DAGVTLAVRLPVTDEAAARTTLRDLTQGRVVIPD
Specific function: Unknown
COG id: COG1739
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the IMPACT family [H]
Homologues:
Organism=Escherichia coli, GI87082338, Length=189, Percent_Identity=37.037037037037, Blast_Score=92, Evalue=3e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR020568 - InterPro: IPR000640 - InterPro: IPR015796 - InterPro: IPR015269 - InterPro: IPR020569 - InterPro: IPR001498 [H]
Pfam domain/function: PF09186 DUF1949; PF01205 UPF0029 [H]
EC number: NA
Molecular weight: Translated: 20876; Mature: 20745
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTYTLRAPVRAELEIRKSRFIGLAVPVEDRAAAMDVIARLRAEHPAATHVCWALLAGGQ CCCCCCCCCCHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC SGMSDDGEPSGTAGRPILEVLRHHDLDGTLGAVVRYFGGVKLGAGGLVRAYTDAIATALM CCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHH GAERVERIARTTLTLVTDYADEARIRRWIDDAGYALVDAAYDAGVTLAVRLPVTDEAAAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHCCCCEEEEEEECCCCHHHHH TTLRDLTQGRVVIPD HHHHHHHCCCEECCC >Mature Secondary Structure PTYTLRAPVRAELEIRKSRFIGLAVPVEDRAAAMDVIARLRAEHPAATHVCWALLAGGQ CCCCCCCCCHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC SGMSDDGEPSGTAGRPILEVLRHHDLDGTLGAVVRYFGGVKLGAGGLVRAYTDAIATALM CCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHH GAERVERIARTTLTLVTDYADEARIRRWIDDAGYALVDAAYDAGVTLAVRLPVTDEAAAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHCCCCEEEEEEECCCCHHHHH TTLRDLTQGRVVIPD HHHHHHHCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 3141378; 8313894 [H]