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The map label for this gene is ompW [C]

Identifier: 17547686

GI number: 17547686

Start: 3199292

End: 3199966

Strand: Direct

Name: ompW [C]

Synonym: RSc2967

Alternate gene names: 17547686

Gene position: 3199292-3199966 (Clockwise)

Preceding gene: 17547658

Following gene: 17547695

Centisome position: 86.09

GC content: 64.44

Gene sequence:

>675_bases
ATGGCAGTTGTCCGTCCAGCCGTCGTTGCCGCCGCAGCCAGCCTCATCGCAGCGGCCTTTTGCCCGATCGCGCATGCCGA
GGGCGGCGACCTGCCCCTGGTCAGCGGCAACTGGATGGTCCGCCTGCGCGCGGTCAACCTGACGGCGGCCAACAAGTCCG
ACGCGATTCCCGCGCTGGCGGTGCCCGATGACGCCATCCATATCAACAACAAGGCGTTCCCCGAACTGGATATCTCGTAT
TTCTTCACGCCCAACCTGGCCGCCGAACTGATCCTGACCTACCCGCAGCAGCAAGACGTAACGGTCATGCAAAGTGCGCT
GGGTGGGCCGACCAAGATCGGCAGCTTCCGCCACCTGCCGCCGATCCTGACGCTGCAATATCACTTCCGGCCGGAATCGC
GCTTCAAGCCCTATCTCGGCGCAGGCCTCAACTACACGCGCATCTCCAGCGTAGACCTGCAGGTGCCGGGCGTCGGGCCG
CTCGACCTGAGCCGAAACAGTTTCGGCCCCGCGCTGCAGGCCGGTTTCGATTACCGCCTGACGGACCGCGTCTACCTCAA
CGTCGACATCAAGAAGACCTGGATCAGCGCCGACGTGAAACTGGGTGGCCAGACCGTCAGCAAGGTGAGGATCGATCCGT
GGCTGGTCGGCGTGGGCCTGGGCTACCGCTTCTGA

Upstream 100 bases:

>100_bases
GCATCCCGGCCGTCATCTTGATCCGGCGCAAATGCGGAACCGCCCATCCGCGCAAGACTGGCGCCCATCACATCAACGAG
ACCACATTGAGGGAGCGTTC

Downstream 100 bases:

>100_bases
AGGAGACGATCAACTGACACTTTCCTGATCGACTTTTCCGGCGCGCCGCAGGGGCCGTCGACGGCGGGGGCGCTCGTCGG
CGGTGGTTGGCGCGTTCGGC

Product: outer membrane signal peptide protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MAVVRPAVVAAAASLIAAAFCPIAHAEGGDLPLVSGNWMVRLRAVNLTAANKSDAIPALAVPDDAIHINNKAFPELDISY
FFTPNLAAELILTYPQQQDVTVMQSALGGPTKIGSFRHLPPILTLQYHFRPESRFKPYLGAGLNYTRISSVDLQVPGVGP
LDLSRNSFGPALQAGFDYRLTDRVYLNVDIKKTWISADVKLGGQTVSKVRIDPWLVGVGLGYRF

Sequences:

>Translated_224_residues
MAVVRPAVVAAAASLIAAAFCPIAHAEGGDLPLVSGNWMVRLRAVNLTAANKSDAIPALAVPDDAIHINNKAFPELDISY
FFTPNLAAELILTYPQQQDVTVMQSALGGPTKIGSFRHLPPILTLQYHFRPESRFKPYLGAGLNYTRISSVDLQVPGVGP
LDLSRNSFGPALQAGFDYRLTDRVYLNVDIKKTWISADVKLGGQTVSKVRIDPWLVGVGLGYRF
>Mature_223_residues
AVVRPAVVAAAASLIAAAFCPIAHAEGGDLPLVSGNWMVRLRAVNLTAANKSDAIPALAVPDDAIHINNKAFPELDISYF
FTPNLAAELILTYPQQQDVTVMQSALGGPTKIGSFRHLPPILTLQYHFRPESRFKPYLGAGLNYTRISSVDLQVPGVGPL
DLSRNSFGPALQAGFDYRLTDRVYLNVDIKKTWISADVKLGGQTVSKVRIDPWLVGVGLGYRF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=164, Percent_Identity=33.5365853658537, Blast_Score=80, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 24258; Mature: 24127

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVVRPAVVAAAASLIAAAFCPIAHAEGGDLPLVSGNWMVRLRAVNLTAANKSDAIPALA
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEEEEEEEEECCCCCCCCEEE
VPDDAIHINNKAFPELDISYFFTPNLAAELILTYPQQQDVTVMQSALGGPTKIGSFRHLP
CCCCEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCC
PILTLQYHFRPESRFKPYLGAGLNYTRISSVDLQVPGVGPLDLSRNSFGPALQAGFDYRL
CEEEEEEEECCCCCCCCHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHCCCCEEE
TDRVYLNVDIKKTWISADVKLGGQTVSKVRIDPWLVGVGLGYRF
EEEEEEEEEEEEEEEEEEEEECCCEEEEEEECEEEEEECCCCCC
>Mature Secondary Structure 
AVVRPAVVAAAASLIAAAFCPIAHAEGGDLPLVSGNWMVRLRAVNLTAANKSDAIPALA
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEEEEEEEEECCCCCCCCEEE
VPDDAIHINNKAFPELDISYFFTPNLAAELILTYPQQQDVTVMQSALGGPTKIGSFRHLP
CCCCEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCC
PILTLQYHFRPESRFKPYLGAGLNYTRISSVDLQVPGVGPLDLSRNSFGPALQAGFDYRL
CEEEEEEEECCCCCCCCHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHCCCCEEE
TDRVYLNVDIKKTWISADVKLGGQTVSKVRIDPWLVGVGLGYRF
EEEEEEEEEEEEEEEEEEEEECCCEEEEEEECEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]