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The map label for this gene is 17547652

Identifier: 17547652

GI number: 17547652

Start: 3163636

End: 3164775

Strand: Reverse

Name: 17547652

Synonym: RSc2933

Alternate gene names: NA

Gene position: 3164775-3163636 (Counterclockwise)

Preceding gene: 17547653

Following gene: 17547650

Centisome position: 85.16

GC content: 61.49

Gene sequence:

>1140_bases
ATGAAAATGAAACTGTTTGCAGCTGCTGTTGCAGCTCTGGCCGCCGGTGGCGCCTACGCTCAATCGTCCGTGACTCTGTA
CGGTGTGGCCGACGTCGGCGTGGAATGGGCCAACAAGGTGCCGGGCGCTGACGGCCAAGGCCATTCGCGCGTTGCAATGC
AGTCGGGCAACCTGTCCGGCTCGCGCTGGGGCCTGCGTGGCGTTGAAGACCTGGGCGGTGGCCTGAAGGGTATCTTCAAC
CTGGAAAGCGGCTTCAACCTCGATACCGGCACGTCGGCCCAAAGCAGCCGTCTGTTCGGCCGTAACGCCTACGTCGGTCT
GCAAGGTCAATGGGGTCAGCTGACCCTGGGCCGTCAGCAAAACCTGCTGTACGACTTCGCACTGGCCTATGACCCGATGG
CCATCGCTGGCCGTTACTCGATCACGGCACAAGACGCCTTCATGGCTGGCCGTGCTGACAACGCCATCAAGTACATCGGC
ACGTTCGGTGGCCTGAGCGTTTCGGCTCTGTATGCGTTCAACCGCGACGGCCAAGAAGTTGCCGGCGTGAACAAGCTGGG
CCGCGAGTGGAGCCTGGGTGCAAACTACGCTGCTGGCCCGTTCGGCCTGGGTGTGGTGTATGACCAATCGAATGGCACGG
CAGCGTCGAACGCTTCGTTCGCTGCTCAGAACGCTGCGGCTGACACCAAGGAACAACGCGCCACGATCGCTGGCTCGTAC
GCCTTCGGCCCGGCCAAGCTGTACGCTGGCTATCGTTGGTACCACGCCAACTTCGCAACGGTTGCCGGCGCTGGCAACCT
GCGTTCGAACCTGTACTGGCTGGGTGCTGGCTACCAAGCTACGCCGGCTCTGACGCTGACGGGCACGGCTTACTACCAAC
AGTTCAAGAACAGCGGTACGGGTAACCCGTGGCTGTTCGTTGTCGGTACCGACTACGCGCTGTCCAAGCGCACCGATGCC
TACTTCAACGTCGCCTACGCTAAGAACAGCAATGGCTCGACGCTGGGTGTGGCCGGCATCAACGGCGCTTCGTCGGGTAA
CGCGACGACGCTGCAATCGACCGACAACCAAGTTCTGTCGAACTCCACCAACACCGGCAACCAGTTCGGTGCTGTGGTTG
GTATCCGCCACAAGTTCTAA

Upstream 100 bases:

>100_bases
TCCGTCAGCGCTGGCCCATAATGCCGTCAGACGTGAGGTTCCTGCGTCGTCCATAAGGACAGTCAAGATTTCCCAATCAG
TTGACAAGGAAAGTGTCGAT

Downstream 100 bases:

>100_bases
TTTGACGCGCTCGTAAGGGCGCTTCGAATGAACGGCGAAACGCCGATCCCGAAAGGGGTCGGCGTTTTTCTTTGGGCTTT
CGTCATCGCTTAGCGTCGAT

Product: porin signal peptide protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MKMKLFAAAVAALAAGGAYAQSSVTLYGVADVGVEWANKVPGADGQGHSRVAMQSGNLSGSRWGLRGVEDLGGGLKGIFN
LESGFNLDTGTSAQSSRLFGRNAYVGLQGQWGQLTLGRQQNLLYDFALAYDPMAIAGRYSITAQDAFMAGRADNAIKYIG
TFGGLSVSALYAFNRDGQEVAGVNKLGREWSLGANYAAGPFGLGVVYDQSNGTAASNASFAAQNAAADTKEQRATIAGSY
AFGPAKLYAGYRWYHANFATVAGAGNLRSNLYWLGAGYQATPALTLTGTAYYQQFKNSGTGNPWLFVVGTDYALSKRTDA
YFNVAYAKNSNGSTLGVAGINGASSGNATTLQSTDNQVLSNSTNTGNQFGAVVGIRHKF

Sequences:

>Translated_379_residues
MKMKLFAAAVAALAAGGAYAQSSVTLYGVADVGVEWANKVPGADGQGHSRVAMQSGNLSGSRWGLRGVEDLGGGLKGIFN
LESGFNLDTGTSAQSSRLFGRNAYVGLQGQWGQLTLGRQQNLLYDFALAYDPMAIAGRYSITAQDAFMAGRADNAIKYIG
TFGGLSVSALYAFNRDGQEVAGVNKLGREWSLGANYAAGPFGLGVVYDQSNGTAASNASFAAQNAAADTKEQRATIAGSY
AFGPAKLYAGYRWYHANFATVAGAGNLRSNLYWLGAGYQATPALTLTGTAYYQQFKNSGTGNPWLFVVGTDYALSKRTDA
YFNVAYAKNSNGSTLGVAGINGASSGNATTLQSTDNQVLSNSTNTGNQFGAVVGIRHKF
>Mature_379_residues
MKMKLFAAAVAALAAGGAYAQSSVTLYGVADVGVEWANKVPGADGQGHSRVAMQSGNLSGSRWGLRGVEDLGGGLKGIFN
LESGFNLDTGTSAQSSRLFGRNAYVGLQGQWGQLTLGRQQNLLYDFALAYDPMAIAGRYSITAQDAFMAGRADNAIKYIG
TFGGLSVSALYAFNRDGQEVAGVNKLGREWSLGANYAAGPFGLGVVYDQSNGTAASNASFAAQNAAADTKEQRATIAGSY
AFGPAKLYAGYRWYHANFATVAGAGNLRSNLYWLGAGYQATPALTLTGTAYYQQFKNSGTGNPWLFVVGTDYALSKRTDA
YFNVAYAKNSNGSTLGVAGINGASSGNATTLQSTDNQVLSNSTNTGNQFGAVVGIRHKF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 39556; Mature: 39556

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMKLFAAAVAALAAGGAYAQSSVTLYGVADVGVEWANKVPGADGQGHSRVAMQSGNLSG
CCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHCCHHHHHCCCCCCCCCCCEEEEECCCCCC
SRWGLRGVEDLGGGLKGIFNLESGFNLDTGTSAQSSRLFGRNAYVGLQGQWGQLTLGRQQ
CCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEECCCEEEEECCCCCEEEECCCC
NLLYDFALAYDPMAIAGRYSITAQDAFMAGRADNAIKYIGTFGGLSVSALYAFNRDGQEV
CEEEEEEECCCCEEEECEEEEEECHHEECCCCCCCEEEEECCCCCEEEEEEEECCCCHHH
AGVNKLGREWSLGANYAAGPFGLGVVYDQSNGTAASNASFAAQNAAADTKEQRATIAGSY
HHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHCCCCCCCHHHHHEEEECC
AFGPAKLYAGYRWYHANFATVAGAGNLRSNLYWLGAGYQATPALTLTGTAYYQQFKNSGT
CCCCHHHCCCEEEEECCEEEEECCCCCCCCEEEEECCCCCCCEEEEECHHHHHHHHCCCC
GNPWLFVVGTDYALSKRTDAYFNVAYAKNSNGSTLGVAGINGASSGNATTLQSTDNQVLS
CCCEEEEEECCCEECCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCEEEEECCCCHHHC
NSTNTGNQFGAVVGIRHKF
CCCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MKMKLFAAAVAALAAGGAYAQSSVTLYGVADVGVEWANKVPGADGQGHSRVAMQSGNLSG
CCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHCCHHHHHCCCCCCCCCCCEEEEECCCCCC
SRWGLRGVEDLGGGLKGIFNLESGFNLDTGTSAQSSRLFGRNAYVGLQGQWGQLTLGRQQ
CCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEECCCEEEEECCCCCEEEECCCC
NLLYDFALAYDPMAIAGRYSITAQDAFMAGRADNAIKYIGTFGGLSVSALYAFNRDGQEV
CEEEEEEECCCCEEEECEEEEEECHHEECCCCCCCEEEEECCCCCEEEEEEEECCCCHHH
AGVNKLGREWSLGANYAAGPFGLGVVYDQSNGTAASNASFAAQNAAADTKEQRATIAGSY
HHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHCCCCCCCHHHHHEEEECC
AFGPAKLYAGYRWYHANFATVAGAGNLRSNLYWLGAGYQATPALTLTGTAYYQQFKNSGT
CCCCHHHCCCEEEEECCEEEEECCCCCCCCEEEEECCCCCCCEEEEECHHHHHHHHCCCC
GNPWLFVVGTDYALSKRTDAYFNVAYAKNSNGSTLGVAGINGASSGNATTLQSTDNQVLS
CCCEEEEEECCCEECCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCEEEEECCCCHHHC
NSTNTGNQFGAVVGIRHKF
CCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]