Click here to switch to the map view.

The map label for this gene is sspA [H]

Identifier: 17547645

GI number: 17547645

Start: 3156955

End: 3157566

Strand: Reverse

Name: sspA [H]

Synonym: RSc2926

Alternate gene names: 17547645

Gene position: 3157566-3156955 (Counterclockwise)

Preceding gene: 17547646

Following gene: 17547644

Centisome position: 84.96

GC content: 59.97

Gene sequence:

>612_bases
ATGATGGTCTTGTACTCGGGCACCACTTGCCCGTTCTCGCAGCGTTGCCGACTCGTCCTGTTCGAAAAGGGCATGGATTT
CGAGATTCGTGACGTCGATCTCTTCAACAAGCCGGAAGACATCGCGGTGATGAACCCGTACGGCCAGGTGCCCATCCTGG
TCGAGCGCGACCTGATCCTGTACGAGTCGAACATCATCAACGAGTACATCGACGAGCGCTTCCCGCACCCGCAGCTGATG
CCGGCCGACCCGGTGCAGCGTGCCCGCGCCCGCCTGTTCCTGTTCAACTTCGAGAAGGAACTGTTCACGCACGTGTCCGT
GCTGGAGAACGAGAAGGGCAAGGCCGCCGAGAAGTCGCACGAGAAGGCGCGCGCCGCCATCCGTGACCGCCTCACGCAAC
TCGCCCCGATTTTCCTGAAGAACAAGTACATGCTGGGCGAAGAGTTCTCGATGCTGGATGTGGCGATCGCGCCGCTGCTG
TGGCGCCTGGACCACTACGGTATCGAACTGTCGAAGAATGCTGCCCCGCTGATGAAATACGCTGAGCGTATCTTCAGCCG
TCCGGCGTATATTGAAGCGCTGACGCCGTCGGAAAAGGTGATGCGTCGCTGA

Upstream 100 bases:

>100_bases
CCTTTGCGTTTTCGTTTTGATGCCGCGGGCGATGTGGTATATCGCAGCGGTTGTACCGTCATCGGGCCGCCCCCGGCCCG
AGCGTCAAGGAACCAAAGCC

Downstream 100 bases:

>100_bases
TTACCGCCGGGCACGGTCGCGGTCTTTGCGGCTGCGCCCATCGGTTACTCTTTTCATCATGTCGGAAACTTCAACCAAGC
CCTATCTGATCCGGGCCATC

Product: transcription modulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MMVLYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPEDIAVMNPYGQVPILVERDLILYESNIINEYIDERFPHPQLM
PADPVQRARARLFLFNFEKELFTHVSVLENEKGKAAEKSHEKARAAIRDRLTQLAPIFLKNKYMLGEEFSMLDVAIAPLL
WRLDHYGIELSKNAAPLMKYAERIFSRPAYIEALTPSEKVMRR

Sequences:

>Translated_203_residues
MMVLYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPEDIAVMNPYGQVPILVERDLILYESNIINEYIDERFPHPQLM
PADPVQRARARLFLFNFEKELFTHVSVLENEKGKAAEKSHEKARAAIRDRLTQLAPIFLKNKYMLGEEFSMLDVAIAPLL
WRLDHYGIELSKNAAPLMKYAERIFSRPAYIEALTPSEKVMRR
>Mature_203_residues
MMVLYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPEDIAVMNPYGQVPILVERDLILYESNIINEYIDERFPHPQLM
PADPVQRARARLFLFNFEKELFTHVSVLENEKGKAAEKSHEKARAAIRDRLTQLAPIFLKNKYMLGEEFSMLDVAIAPLL
WRLDHYGIELSKNAAPLMKYAERIFSRPAYIEALTPSEKVMRR

Specific function: Forms an equimolar complex with the RNA polymerase holoenzyme (RNAP) but not with the core enzyme [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GST N-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI38016131, Length=184, Percent_Identity=33.695652173913, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI4758484, Length=200, Percent_Identity=32, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI300360569, Length=175, Percent_Identity=34.2857142857143, Blast_Score=94, Evalue=8e-20,
Organism=Homo sapiens, GI300360534, Length=194, Percent_Identity=31.9587628865979, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI300360532, Length=197, Percent_Identity=30.9644670050761, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI300360567, Length=180, Percent_Identity=29.4444444444444, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI300360571, Length=171, Percent_Identity=29.8245614035088, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI22202624, Length=178, Percent_Identity=28.6516853932584, Blast_Score=68, Evalue=6e-12,
Organism=Escherichia coli, GI1789624, Length=203, Percent_Identity=44.8275862068966, Blast_Score=174, Evalue=3e-45,
Organism=Caenorhabditis elegans, GI17551302, Length=198, Percent_Identity=30.3030303030303, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24660979, Length=98, Percent_Identity=38.7755102040816, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21355779, Length=176, Percent_Identity=28.4090909090909, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: 480 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1982 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010987
- InterPro:   IPR004045
- InterPro:   IPR017933
- InterPro:   IPR004046
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00043 GST_C; PF02798 GST_N [H]

EC number: NA

Molecular weight: Translated: 23673; Mature: 23673

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVLYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPEDIAVMNPYGQVPILVERDLIL
CEEEEECCCCCHHHCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCEEEECCEEE
YESNIINEYIDERFPHPQLMPADPVQRARARLFLFNFEKELFTHVSVLENEKGKAAEKSH
EHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEHHHHHHHHHHHHHCCCCCHHHHHH
EKARAAIRDRLTQLAPIFLKNKYMLGEEFSMLDVAIAPLLWRLDHYGIELSKNAAPLMKY
HHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHH
AERIFSRPAYIEALTPSEKVMRR
HHHHHCCCCEEEEECCHHHHHCC
>Mature Secondary Structure
MMVLYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPEDIAVMNPYGQVPILVERDLIL
CEEEEECCCCCHHHCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCEEEECCEEE
YESNIINEYIDERFPHPQLMPADPVQRARARLFLFNFEKELFTHVSVLENEKGKAAEKSH
EHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEHHHHHHHHHHHHHCCCCCHHHHHH
EKARAAIRDRLTQLAPIFLKNKYMLGEEFSMLDVAIAPLLWRLDHYGIELSKNAAPLMKY
HHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHH
AERIFSRPAYIEALTPSEKVMRR
HHHHHCCCCEEEEECCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]