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The map label for this gene is rpe [H]

Identifier: 17547598

GI number: 17547598

Start: 3107102

End: 3107830

Strand: Direct

Name: rpe [H]

Synonym: RSc2879

Alternate gene names: 17547598

Gene position: 3107102-3107830 (Clockwise)

Preceding gene: 17547596

Following gene: 17547599

Centisome position: 83.6

GC content: 68.45

Gene sequence:

>729_bases
ATGCCTGCAGCCATCGATCCGTCCGGTTTCCGCATCGCCCCGTCCATCCTGTCAGCCGATTTTGCCCGCCTGGGCGAGGA
GGTACGCCGCGTGATCGAGGGCGGCGCCGACTGGATCCACTTCGATGTGATGGACAACCACTACGTGCCGAACCTGACGG
TCGGCCCGCTGGTCTGCGAGGCGATCCGCCCGCACGCCCAGCGCGACGGCAAGCCGGTGCCGATCGATGTGCACCTGATG
GTGCGCCCGGTCGACCGCATCATCCCCGACTTCGCCAAGGCCGGCGCCGATCTGATCACCTTCCATCCGGAGGCGTCCGA
GCACATCGACCGGTCGCTGGCGCTGATCCGCGACCAGGGCTGCAAGGCCGGCCTGGTGTTCAACCCGGCCACGCCGCTGC
ACTACCTGGACCACGTGATGGATCGCCTGGACATGGTGCTGATCATGTCGGTCAACCCGGGCTTCGGCGGGCAGTCGTTC
ATTCCGGAGGCGCTCACCAAGCTGCGCGCGGTGCGCCAGAAGCTGGATGCCTACGCAGACAGGACCGGCCGCCGGATCCT
GCTGGAAATCGACGGCGGGGTGAAGGCCGACAACATCGCCGAGATCGCCCGCGCGGGTGCCGACACCTTCGTCGCCGGCT
CGGCCGTGTTCGGCAAGCCGGATGCGGACGGCGGCTATCGCGGCACGGTGGGTGCGCTGCGCAGCGCGCTCGAGGGCATC
ACGGCATGA

Upstream 100 bases:

>100_bases
CAAGGCCGCAGTGCCCGGCAAGGCGCGGCGGCCGGACCGCCGATCCGGCTAAAATAGCGCCCTTCTTCGCGCATCTGCGC
GCCTTTTTCTGGTCCCCATC

Downstream 100 bases:

>100_bases
CGGACGCGCTGCCGGCCGGGCCCGTGCGCGTCGTCATCATCGACCTGGACGGGACGATGGTGGACACGGCGGGCGACTTC
CACGCCGCCATCAACGCGAT

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MPAAIDPSGFRIAPSILSADFARLGEEVRRVIEGGADWIHFDVMDNHYVPNLTVGPLVCEAIRPHAQRDGKPVPIDVHLM
VRPVDRIIPDFAKAGADLITFHPEASEHIDRSLALIRDQGCKAGLVFNPATPLHYLDHVMDRLDMVLIMSVNPGFGGQSF
IPEALTKLRAVRQKLDAYADRTGRRILLEIDGGVKADNIAEIARAGADTFVAGSAVFGKPDADGGYRGTVGALRSALEGI
TA

Sequences:

>Translated_242_residues
MPAAIDPSGFRIAPSILSADFARLGEEVRRVIEGGADWIHFDVMDNHYVPNLTVGPLVCEAIRPHAQRDGKPVPIDVHLM
VRPVDRIIPDFAKAGADLITFHPEASEHIDRSLALIRDQGCKAGLVFNPATPLHYLDHVMDRLDMVLIMSVNPGFGGQSF
IPEALTKLRAVRQKLDAYADRTGRRILLEIDGGVKADNIAEIARAGADTFVAGSAVFGKPDADGGYRGTVGALRSALEGI
TA
>Mature_241_residues
PAAIDPSGFRIAPSILSADFARLGEEVRRVIEGGADWIHFDVMDNHYVPNLTVGPLVCEAIRPHAQRDGKPVPIDVHLMV
RPVDRIIPDFAKAGADLITFHPEASEHIDRSLALIRDQGCKAGLVFNPATPLHYLDHVMDRLDMVLIMSVNPGFGGQSFI
PEALTKLRAVRQKLDAYADRTGRRILLEIDGGVKADNIAEIARAGADTFVAGSAVFGKPDADGGYRGTVGALRSALEGIT
A

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=228, Percent_Identity=38.5964912280702, Blast_Score=160, Evalue=9e-40,
Organism=Homo sapiens, GI219879828, Length=228, Percent_Identity=36.8421052631579, Blast_Score=150, Evalue=1e-36,
Organism=Homo sapiens, GI24307923, Length=177, Percent_Identity=31.0734463276836, Blast_Score=90, Evalue=2e-18,
Organism=Escherichia coli, GI1789788, Length=232, Percent_Identity=63.3620689655172, Blast_Score=305, Evalue=2e-84,
Organism=Escherichia coli, GI1790523, Length=207, Percent_Identity=37.6811594202899, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1790754, Length=225, Percent_Identity=28.8888888888889, Blast_Score=86, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17552948, Length=233, Percent_Identity=38.6266094420601, Blast_Score=152, Evalue=1e-37,
Organism=Saccharomyces cerevisiae, GI6322341, Length=218, Percent_Identity=40.3669724770642, Blast_Score=164, Evalue=1e-41,
Organism=Drosophila melanogaster, GI24586301, Length=215, Percent_Identity=35.8139534883721, Blast_Score=140, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 26078; Mature: 25947

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAAIDPSGFRIAPSILSADFARLGEEVRRVIEGGADWIHFDVMDNHYVPNLTVGPLVCE
CCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHH
AIRPHAQRDGKPVPIDVHLMVRPVDRIIPDFAKAGADLITFHPEASEHIDRSLALIRDQG
HHCHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCC
CKAGLVFNPATPLHYLDHVMDRLDMVLIMSVNPGFGGQSFIPEALTKLRAVRQKLDAYAD
CCCCEEECCCCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC
RTGRRILLEIDGGVKADNIAEIARAGADTFVAGSAVFGKPDADGGYRGTVGALRSALEGI
CCCCEEEEEECCCCCHHHHHHHHHCCCCCEEECCEEECCCCCCCCCCCHHHHHHHHHHHC
TA
CC
>Mature Secondary Structure 
PAAIDPSGFRIAPSILSADFARLGEEVRRVIEGGADWIHFDVMDNHYVPNLTVGPLVCE
CCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHH
AIRPHAQRDGKPVPIDVHLMVRPVDRIIPDFAKAGADLITFHPEASEHIDRSLALIRDQG
HHCHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCC
CKAGLVFNPATPLHYLDHVMDRLDMVLIMSVNPGFGGQSFIPEALTKLRAVRQKLDAYAD
CCCCEEECCCCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC
RTGRRILLEIDGGVKADNIAEIARAGADTFVAGSAVFGKPDADGGYRGTVGALRSALEGI
CCCCEEEEEECCCCCHHHHHHHHHCCCCCEEECCEEECCCCCCCCCCCHHHHHHHHHHHC
TA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1429456 [H]