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The map label for this gene is yfjD [H]

Identifier: 17547543

GI number: 17547543

Start: 3036995

End: 3038272

Strand: Direct

Name: yfjD [H]

Synonym: RSc2824

Alternate gene names: 17547543

Gene position: 3036995-3038272 (Clockwise)

Preceding gene: 17547542

Following gene: 17547544

Centisome position: 81.72

GC content: 64.16

Gene sequence:

>1278_bases
TTGGACTCCTGGCCGTTATGGGCGCAGCTCGGCGCCGTCGTGCTGCTGCTGTGCTGCTCCGCCTTCTTCTCGATCTCCGA
GACCAGCCTGATGGCGCTCAACCGCCATCGCCTGCGCCACCTCGCCAAATCCAACGTCGCCGGCGCGCGCCGCACGCAGG
GCCTGCTGGGCCAGACCGATAAGCTGCTGTCGCTGATCCTGATCGGCAACAACCTGATCAATACCGCAGTGCCGGTGCTG
ATCGCCAACCTGGCCATCCATTACTTCGGCAACAGCGGCACCACGCTGTCGATCGCCACGGCCATCGTCGCCTTCCTGAT
CATCGTGTTCTGCGAGATCGCGCCGAAAATCGCCGGCGCGACGTATCCCGAGCGGATCTCGTTTCCGGCCAGCTTCATCA
TCGCGCCACTGCTGAGGCTGGCGACACCGCTGGTGACCGTCGTCAATGCGTTCGTCACGGTGCTGCTGCGGCTGGTGCGC
ATCAACCCGCGCCAGGCGCCCGAGCAGAGGATGTCGGCCGAGGAGCTGCGCACGCTGGTGCTGGAATCGGGCAATTTCAT
TCCGCACAAGCACCGCAGCATCCTGCTCAACCTGTTCGACCTGGACGCCATCACCGTGGACGACGTGATGACGCCGCGCG
CGCGGGTGGAATCGCTGGACCTGTCGCGGCCCATCGAAGAGGTGATCCAGCAGTTGGAGACCTGCTACCACAACAAGCTC
CCCGTGTTCGAGCAGGACACCGACCAGGTGCTCGGCATCCTGCACGTGCGCAAAGCCCTGTCGCTGCTGGGCCATGCGGA
GCTCATCCACGACGATTTCCGCAGCCTGCTGGCCAAACCCTACTTCGTGCCGAGCGGCACGCCGGTGTTCCGGCAGCTAC
AGTATTTCCAGGAAAACCGGCGGCGCATCGGACTGGTGATCAACGAATACGGCGACATGCTGGGGCTGGTGACACTGGAA
GACATCATCGAGGAGATGATCGGCGAGTTCACCACCACGCTGCCGAACGCCGGCAAGCTGGCCTGGGATGCACAGAACGC
CTATCTGGCCGACGCAGGCATGTCGCTGCGCGACCTGAACCGCCGCCTGGGCCTGCAACTGCCGACCGATGGACCGAAAA
CGCTCAACGGCCTGGTGCTGGAAGTACTGGAAGAAATTCCCGAGGCTCCGGTCAGCGTACGGATCGCCGGATGCGTGATG
GACATCGTGCAGATGGACAGCCAGTCGATCCGCACCGTGCGCCTGCACCGGCCCGCCGCGGGGCAAAAGCGCAGTTGA

Upstream 100 bases:

>100_bases
GGGACGGGATGCCGCCCGGCCGGCAATGGGCTGCCGCATGCCATCGGCACGGCAAACCCCTCTGCTATAGTGGGCGCTTC
CCTGCTCCTGCACATCCGCC

Downstream 100 bases:

>100_bases
TGGCACCCGCGGCGCCAAGCGCTTCAGACCGCGCCACTTTCTGCCGATGTGGCACAAATGCACGTGTCACTTCTGAGCGT
GCTTTACAAATCGCGGGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MDSWPLWAQLGAVVLLLCCSAFFSISETSLMALNRHRLRHLAKSNVAGARRTQGLLGQTDKLLSLILIGNNLINTAVPVL
IANLAIHYFGNSGTTLSIATAIVAFLIIVFCEIAPKIAGATYPERISFPASFIIAPLLRLATPLVTVVNAFVTVLLRLVR
INPRQAPEQRMSAEELRTLVLESGNFIPHKHRSILLNLFDLDAITVDDVMTPRARVESLDLSRPIEEVIQQLETCYHNKL
PVFEQDTDQVLGILHVRKALSLLGHAELIHDDFRSLLAKPYFVPSGTPVFRQLQYFQENRRRIGLVINEYGDMLGLVTLE
DIIEEMIGEFTTTLPNAGKLAWDAQNAYLADAGMSLRDLNRRLGLQLPTDGPKTLNGLVLEVLEEIPEAPVSVRIAGCVM
DIVQMDSQSIRTVRLHRPAAGQKRS

Sequences:

>Translated_425_residues
MDSWPLWAQLGAVVLLLCCSAFFSISETSLMALNRHRLRHLAKSNVAGARRTQGLLGQTDKLLSLILIGNNLINTAVPVL
IANLAIHYFGNSGTTLSIATAIVAFLIIVFCEIAPKIAGATYPERISFPASFIIAPLLRLATPLVTVVNAFVTVLLRLVR
INPRQAPEQRMSAEELRTLVLESGNFIPHKHRSILLNLFDLDAITVDDVMTPRARVESLDLSRPIEEVIQQLETCYHNKL
PVFEQDTDQVLGILHVRKALSLLGHAELIHDDFRSLLAKPYFVPSGTPVFRQLQYFQENRRRIGLVINEYGDMLGLVTLE
DIIEEMIGEFTTTLPNAGKLAWDAQNAYLADAGMSLRDLNRRLGLQLPTDGPKTLNGLVLEVLEEIPEAPVSVRIAGCVM
DIVQMDSQSIRTVRLHRPAAGQKRS
>Mature_425_residues
MDSWPLWAQLGAVVLLLCCSAFFSISETSLMALNRHRLRHLAKSNVAGARRTQGLLGQTDKLLSLILIGNNLINTAVPVL
IANLAIHYFGNSGTTLSIATAIVAFLIIVFCEIAPKIAGATYPERISFPASFIIAPLLRLATPLVTVVNAFVTVLLRLVR
INPRQAPEQRMSAEELRTLVLESGNFIPHKHRSILLNLFDLDAITVDDVMTPRARVESLDLSRPIEEVIQQLETCYHNKL
PVFEQDTDQVLGILHVRKALSLLGHAELIHDDFRSLLAKPYFVPSGTPVFRQLQYFQENRRRIGLVINEYGDMLGLVTLE
DIIEEMIGEFTTTLPNAGKLAWDAQNAYLADAGMSLRDLNRRLGLQLPTDGPKTLNGLVLEVLEEIPEAPVSVRIAGCVM
DIVQMDSQSIRTVRLHRPAAGQKRS

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=386, Percent_Identity=21.5025906735751, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI40068053, Length=359, Percent_Identity=26.7409470752089, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI40068055, Length=359, Percent_Identity=26.7409470752089, Blast_Score=80, Evalue=4e-15,
Organism=Escherichia coli, GI145693175, Length=398, Percent_Identity=38.4422110552764, Blast_Score=302, Evalue=3e-83,
Organism=Escherichia coli, GI1790664, Length=430, Percent_Identity=23.2558139534884, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI87082033, Length=358, Percent_Identity=27.0949720670391, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1786879, Length=250, Percent_Identity=26.8, Blast_Score=92, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47129; Mature: 47129

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSWPLWAQLGAVVLLLCCSAFFSISETSLMALNRHRLRHLAKSNVAGARRTQGLLGQTD
CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHH
KLLSLILIGNNLINTAVPVLIANLAIHYFGNSGTTLSIATAIVAFLIIVFCEIAPKIAGA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
TYPERISFPASFIIAPLLRLATPLVTVVNAFVTVLLRLVRINPRQAPEQRMSAEELRTLV
CCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCHHHHHHHH
LESGNFIPHKHRSILLNLFDLDAITVDDVMTPRARVESLDLSRPIEEVIQQLETCYHNKL
HHCCCCCCCHHHHHHHHHHHCCCEEHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCC
PVFEQDTDQVLGILHVRKALSLLGHAELIHDDFRSLLAKPYFVPSGTPVFRQLQYFQENR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
RRIGLVINEYGDMLGLVTLEDIIEEMIGEFTTTLPNAGKLAWDAQNAYLADAGMSLRDLN
HHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEHHCCCHHHHHH
RRLGLQLPTDGPKTLNGLVLEVLEEIPEAPVSVRIAGCVMDIVQMDSQSIRTVRLHRPAA
HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCEEEEECCCC
GQKRS
CCCCC
>Mature Secondary Structure
MDSWPLWAQLGAVVLLLCCSAFFSISETSLMALNRHRLRHLAKSNVAGARRTQGLLGQTD
CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHH
KLLSLILIGNNLINTAVPVLIANLAIHYFGNSGTTLSIATAIVAFLIIVFCEIAPKIAGA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
TYPERISFPASFIIAPLLRLATPLVTVVNAFVTVLLRLVRINPRQAPEQRMSAEELRTLV
CCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCHHHHHHHH
LESGNFIPHKHRSILLNLFDLDAITVDDVMTPRARVESLDLSRPIEEVIQQLETCYHNKL
HHCCCCCCCHHHHHHHHHHHCCCEEHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCC
PVFEQDTDQVLGILHVRKALSLLGHAELIHDDFRSLLAKPYFVPSGTPVFRQLQYFQENR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
RRIGLVINEYGDMLGLVTLEDIIEEMIGEFTTTLPNAGKLAWDAQNAYLADAGMSLRDLN
HHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEHHCCCHHHHHH
RRLGLQLPTDGPKTLNGLVLEVLEEIPEAPVSVRIAGCVMDIVQMDSQSIRTVRLHRPAA
HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCEEEEECCCC
GQKRS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]