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The map label for this gene is ybaO [C]

Identifier: 17547520

GI number: 17547520

Start: 3011392

End: 3011868

Strand: Reverse

Name: ybaO [C]

Synonym: RSc2801

Alternate gene names: 17547520

Gene position: 3011868-3011392 (Counterclockwise)

Preceding gene: 17547522

Following gene: 17547512

Centisome position: 81.04

GC content: 66.04

Gene sequence:

>477_bases
ATGCAGCTCGACCGGCGCGATATCCAGCTACTGAACCTGATGCAGGACGATGCCACCCTGCCGCTGCGCGCGCTGGCCGA
GCGCGTGCACATGTCGGTGGCGACCTGTCAGCGGCGCATTGCCCAGATGCGCGCGGAGGGCATCCTGCTGCGGCAGGTCG
CGCTGGTGGACCGGGTGCGCGTCGGCCGTCCGCTGACCGTGTTCGTGTGGGTGGAGCTGGACCGCCAGCACAGCGCCGCG
CTGCGTGATTTCGAGCGCAAGATGAGCGCCGAGCCCGATGTGCTGGCGTGCTACGAGATCTCCGGCGAGGCGGATTTCCT
GCTGTCGGTCAACGCCGCCTCTATGGAGGCTTACCACGCCTTCACGCGGCGCGTGTTCATCGCCGACAACAACGTGCGTG
GCTTCAAGAGCAACTTCGTCATGCACTGCGCGAAGTACGAAACCAAGATTCCCATCGCTGAGCCCGAGGCCGGCTGA

Upstream 100 bases:

>100_bases
ACGTGGAGAAAAAATTTCGTAAAGCGTGGGCTGCGGCATGGTTCTTCTCGAAATTCTGCGAAAAAATGGAGGGATCGAGT
CCCACCCGGAGGCCATCGCC

Downstream 100 bases:

>100_bases
GCCGTGGGGATCAGGCCGCCGCCCGGGGCAGGGCGGGGCTCACAGTGCGGCGGCGCTCGGGCGGATCACGTCGATCAGCA
GCACGCGCTGGCCTTCGCGC

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MQLDRRDIQLLNLMQDDATLPLRALAERVHMSVATCQRRIAQMRAEGILLRQVALVDRVRVGRPLTVFVWVELDRQHSAA
LRDFERKMSAEPDVLACYEISGEADFLLSVNAASMEAYHAFTRRVFIADNNVRGFKSNFVMHCAKYETKIPIAEPEAG

Sequences:

>Translated_158_residues
MQLDRRDIQLLNLMQDDATLPLRALAERVHMSVATCQRRIAQMRAEGILLRQVALVDRVRVGRPLTVFVWVELDRQHSAA
LRDFERKMSAEPDVLACYEISGEADFLLSVNAASMEAYHAFTRRVFIADNNVRGFKSNFVMHCAKYETKIPIAEPEAG
>Mature_158_residues
MQLDRRDIQLLNLMQDDATLPLRALAERVHMSVATCQRRIAQMRAEGILLRQVALVDRVRVGRPLTVFVWVELDRQHSAA
LRDFERKMSAEPDVLACYEISGEADFLLSVNAASMEAYHAFTRRVFIADNNVRGFKSNFVMHCAKYETKIPIAEPEAG

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=35.3333333333333, Blast_Score=101, Evalue=2e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 18005; Mature: 18005

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLDRRDIQLLNLMQDDATLPLRALAERVHMSVATCQRRIAQMRAEGILLRQVALVDRVR
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VGRPLTVFVWVELDRQHSAALRDFERKMSAEPDVLACYEISGEADFLLSVNAASMEAYHA
CCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECHHHHHHHHH
FTRRVFIADNNVRGFKSNFVMHCAKYETKIPIAEPEAG
HHEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MQLDRRDIQLLNLMQDDATLPLRALAERVHMSVATCQRRIAQMRAEGILLRQVALVDRVR
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VGRPLTVFVWVELDRQHSAALRDFERKMSAEPDVLACYEISGEADFLLSVNAASMEAYHA
CCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECHHHHHHHHH
FTRRVFIADNNVRGFKSNFVMHCAKYETKIPIAEPEAG
HHEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]