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The map label for this gene is araH [H]

Identifier: 17547475

GI number: 17547475

Start: 2967333

End: 2968340

Strand: Reverse

Name: araH [H]

Synonym: RSc2756

Alternate gene names: 17547475

Gene position: 2968340-2967333 (Counterclockwise)

Preceding gene: 17547476

Following gene: 17547474

Centisome position: 79.87

GC content: 67.56

Gene sequence:

>1008_bases
ATGTCCCAGTCCCAACCCCTGCAACGCGCCGACGGGTTTGCCGCGTCGGCCCGCTCGGCCATGAACAACACGCGCCTGCT
GAGGCGGCTGGACGATTTCAGCCTGCCGCTGATCTTCGCCATCCTGTTTGCCGCGCTGTCGCTGTCGGTCGAGTACTTCT
TCTCGTGGCAGAACATGGTCGGCCTGGCGCTGTCCGTCTCGCAGATCGGCATGGTGGCCTGCACCATGATGTTCTGCCTG
GCCTCGCGCGACTTCGACCTGTCGATCGGCTCCACGGTGGCGTTCGCCGGCGTGCTGTGCGCGACGGTCATCAACGCCAC
CGGCAGCATCGCGCTGGGCATCGGCGCGAGCCTGCTGGCCGGCGCGGTGATCGGCGGCATCAATGGCTTCGTGATCGCCC
GGCTGAAGATCAACGCGCTGATCACCACGCTCGCCACCATGGAGATCGTGCGCGGCCTGGCCTTCATCGCCTCGCACGGG
CAGGCGGTGGGCGTCTCGGAGATGGCGTTCTTCGACCTGGGCAACACCATCGTGCTGGGCGTGCCGACGCCGGTGTGGGT
GGCGGCGCTGTGCTTCGTGGCGTTCGGCGTGCTGCTCAACAAGACGGTGTACGGGCGCAACACGCTCGCCATCGGCGGCA
ACCCAGAGGCGGCGCGGCTGGCGGGCGTGAACGTCAACCTGACGCGCATCGTGATCTTCCTGGTCCAGGGCGTGATTGCC
GCGCTGGCCGGCGTGATCCTGGCCGCGCGCATCACCAGCGGCCAGCCGAACGCGGCGCAGGGCTTCGAGCTGAACGTGAT
TTCGGCGTGCGTGCTGGGCGGCGTGTCGCTGATGGGCGGCCGCGCCAGCATCAGCGGGGTGCTGGTCGGCGTGCTGATCA
TGGGCACGGTGCAGAACGCGATGAACCTGCTCAATATCGATGCGTTCTATCAGTACCTGGTGCGCGGCGGCATCCTGCTG
GCGGCGGTGCTGGTGGACCAGATCAAGCATCGCGGCGGCCGCGATTGA

Upstream 100 bases:

>100_bases
CTGCCGCGCGCGCAGGCCACCGAACACGCCGTGCTGAACCTGGCCTTGCGGCCGCGGCGCGACCCATGCGTTGCGGCCCA
GGCCGCTTGAGGAGCCCCCG

Downstream 100 bases:

>100_bases
GGCAGGGGACACCATGATTGCAATCCCGCTCTCCGACCTGCGCTGCACGCTCGGCGAAGGCATCGTCTGGGACGATGCCC
TGGGTGTGCTGTGGTGGACC

Product: L-arabinose transporter permease

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MSQSQPLQRADGFAASARSAMNNTRLLRRLDDFSLPLIFAILFAALSLSVEYFFSWQNMVGLALSVSQIGMVACTMMFCL
ASRDFDLSIGSTVAFAGVLCATVINATGSIALGIGASLLAGAVIGGINGFVIARLKINALITTLATMEIVRGLAFIASHG
QAVGVSEMAFFDLGNTIVLGVPTPVWVAALCFVAFGVLLNKTVYGRNTLAIGGNPEAARLAGVNVNLTRIVIFLVQGVIA
ALAGVILAARITSGQPNAAQGFELNVISACVLGGVSLMGGRASISGVLVGVLIMGTVQNAMNLLNIDAFYQYLVRGGILL
AAVLVDQIKHRGGRD

Sequences:

>Translated_335_residues
MSQSQPLQRADGFAASARSAMNNTRLLRRLDDFSLPLIFAILFAALSLSVEYFFSWQNMVGLALSVSQIGMVACTMMFCL
ASRDFDLSIGSTVAFAGVLCATVINATGSIALGIGASLLAGAVIGGINGFVIARLKINALITTLATMEIVRGLAFIASHG
QAVGVSEMAFFDLGNTIVLGVPTPVWVAALCFVAFGVLLNKTVYGRNTLAIGGNPEAARLAGVNVNLTRIVIFLVQGVIA
ALAGVILAARITSGQPNAAQGFELNVISACVLGGVSLMGGRASISGVLVGVLIMGTVQNAMNLLNIDAFYQYLVRGGILL
AAVLVDQIKHRGGRD
>Mature_334_residues
SQSQPLQRADGFAASARSAMNNTRLLRRLDDFSLPLIFAILFAALSLSVEYFFSWQNMVGLALSVSQIGMVACTMMFCLA
SRDFDLSIGSTVAFAGVLCATVINATGSIALGIGASLLAGAVIGGINGFVIARLKINALITTLATMEIVRGLAFIASHGQ
AVGVSEMAFFDLGNTIVLGVPTPVWVAALCFVAFGVLLNKTVYGRNTLAIGGNPEAARLAGVNVNLTRIVIFLVQGVIAA
LAGVILAARITSGQPNAAQGFELNVISACVLGGVSLMGGRASISGVLVGVLIMGTVQNAMNLLNIDAFYQYLVRGGILLA
AVLVDQIKHRGGRD

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=307, Percent_Identity=58.6319218241042, Blast_Score=337, Evalue=5e-94,
Organism=Escherichia coli, GI1790191, Length=296, Percent_Identity=37.5, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1788896, Length=299, Percent_Identity=34.7826086956522, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI1790524, Length=331, Percent_Identity=30.2114803625378, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=44.6969696969697, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1788471, Length=266, Percent_Identity=39.0977443609023, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1787793, Length=245, Percent_Identity=33.8775510204082, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI87082395, Length=242, Percent_Identity=33.0578512396694, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1787794, Length=270, Percent_Identity=30.3703703703704, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI145693214, Length=240, Percent_Identity=30.4166666666667, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34755; Mature: 34623

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSQPLQRADGFAASARSAMNNTRLLRRLDDFSLPLIFAILFAALSLSVEYFFSWQNMV
CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GLALSVSQIGMVACTMMFCLASRDFDLSIGSTVAFAGVLCATVINATGSIALGIGASLLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHH
GAVIGGINGFVIARLKINALITTLATMEIVRGLAFIASHGQAVGVSEMAFFDLGNTIVLG
HHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEE
VPTPVWVAALCFVAFGVLLNKTVYGRNTLAIGGNPEAARLAGVNVNLTRIVIFLVQGVIA
CCCHHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHH
ALAGVILAARITSGQPNAAQGFELNVISACVLGGVSLMGGRASISGVLVGVLIMGTVQNA
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
MNLLNIDAFYQYLVRGGILLAAVLVDQIKHRGGRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SQSQPLQRADGFAASARSAMNNTRLLRRLDDFSLPLIFAILFAALSLSVEYFFSWQNMV
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GLALSVSQIGMVACTMMFCLASRDFDLSIGSTVAFAGVLCATVINATGSIALGIGASLLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHH
GAVIGGINGFVIARLKINALITTLATMEIVRGLAFIASHGQAVGVSEMAFFDLGNTIVLG
HHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEE
VPTPVWVAALCFVAFGVLLNKTVYGRNTLAIGGNPEAARLAGVNVNLTRIVIFLVQGVIA
CCCHHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHH
ALAGVILAARITSGQPNAAQGFELNVISACVLGGVSLMGGRASISGVLVGVLIMGTVQNA
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
MNLLNIDAFYQYLVRGGILLAAVLVDQIKHRGGRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2445996; 9097040; 9278503; 8045430 [H]