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The map label for this gene is omlA [H]

Identifier: 17547465

GI number: 17547465

Start: 2957032

End: 2957691

Strand: Reverse

Name: omlA [H]

Synonym: RSc2746

Alternate gene names: 17547465

Gene position: 2957691-2957032 (Counterclockwise)

Preceding gene: 17547467

Following gene: 17547464

Centisome position: 79.58

GC content: 67.73

Gene sequence:

>660_bases
ATGACCTTTTTCTCTGCGCGCAGTCCTGTCCGTTCTGCCGACGTCGCTGCCCGCCGCACCAGCCTCCTGCTGGGCGCCGT
GCTCGCTGCGTCGGCGCTGCTGGCCGGGTGTTCGACCTACGACAACTCCACGCGCAAGATTGCCAATGCCATCACGCCGT
ATCGCATCGATATCGTGCAGGGCAACTTCGTCTCGCGCGAGCAGGCTTCGCAGCTCAAGGAAGGCATGACGCGCGACCAG
GTGCGCTACGTGCTCGGCTCGCCGCTCCTGACCGACATGTTCCACGGCAATCGCTGGGATTACGTCTTCTCGTTCAAGCG
CGGCAACACCAACGTCGTGCAGGAGCGCAAGCTGACGGTCTGGTTCGAGGCGGATCGCCTCGCCAAGTGGGCGGGTGCCG
ATGACCTTCCGTCCGAGGTCGAGCTGATTGCCGAGATCGACGGCATCAAGCGGCCGAAGAAGGCCGCGGCGGAAGCGGCA
GCGGCAGCGGGCGCCGCGCCGGCGACACGCGCTCCATCGATTCCGTCCGCCGAGATGAGCGACCGCGTGCAGTCGAGCGC
CGGCGCCAAGAATGCCGTGGATGTCACGCTGCCGGAGCGCCGCACCGGCGGTGGCGGTACCGACACCAGCGTGCCGCCGC
CGGCGACGACCTCGCCCTGA

Upstream 100 bases:

>100_bases
TTGGCGGCAAAAGTCCTATCGACGGGCGCGCTTGACGCGCCAGTGTCGCCCGCCCGCTTCCGTACCGGGTTCTCCGGGAC
CGTTTGAAGGCCGATCGCTC

Downstream 100 bases:

>100_bases
GCAGCGCGGCCTGCGGGCAGCATGACCACCAGCGAGCGGCGGACCGGTTCCGCCGCTCGTCCGTTGTACCGACCGTTTTT
TCTTTTCTCGTTCCGATCCA

Product: lipoprotein transmembrane

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MTFFSARSPVRSADVAARRTSLLLGAVLAASALLAGCSTYDNSTRKIANAITPYRIDIVQGNFVSREQASQLKEGMTRDQ
VRYVLGSPLLTDMFHGNRWDYVFSFKRGNTNVVQERKLTVWFEADRLAKWAGADDLPSEVELIAEIDGIKRPKKAAAEAA
AAAGAAPATRAPSIPSAEMSDRVQSSAGAKNAVDVTLPERRTGGGGTDTSVPPPATTSP

Sequences:

>Translated_219_residues
MTFFSARSPVRSADVAARRTSLLLGAVLAASALLAGCSTYDNSTRKIANAITPYRIDIVQGNFVSREQASQLKEGMTRDQ
VRYVLGSPLLTDMFHGNRWDYVFSFKRGNTNVVQERKLTVWFEADRLAKWAGADDLPSEVELIAEIDGIKRPKKAAAEAA
AAAGAAPATRAPSIPSAEMSDRVQSSAGAKNAVDVTLPERRTGGGGTDTSVPPPATTSP
>Mature_218_residues
TFFSARSPVRSADVAARRTSLLLGAVLAASALLAGCSTYDNSTRKIANAITPYRIDIVQGNFVSREQASQLKEGMTRDQV
RYVLGSPLLTDMFHGNRWDYVFSFKRGNTNVVQERKLTVWFEADRLAKWAGADDLPSEVELIAEIDGIKRPKKAAAEAAA
AAGAAPATRAPSIPSAEMSDRVQSSAGAKNAVDVTLPERRTGGGGTDTSVPPPATTSP

Specific function: May have a structural role in maintaining the cell envelope integrity [H]

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=106, Percent_Identity=37.7358490566038, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 23340; Mature: 23209

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFFSARSPVRSADVAARRTSLLLGAVLAASALLAGCSTYDNSTRKIANAITPYRIDIVQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEEE
GNFVSREQASQLKEGMTRDQVRYVLGSPLLTDMFHGNRWDYVFSFKRGNTNVVQERKLTV
CCCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCEEECCEEEE
WFEADRLAKWAGADDLPSEVELIAEIDGIKRPKKAAAEAAAAAGAAPATRAPSIPSAEMS
EEEHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
DRVQSSAGAKNAVDVTLPERRTGGGGTDTSVPPPATTSP
HHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TFFSARSPVRSADVAARRTSLLLGAVLAASALLAGCSTYDNSTRKIANAITPYRIDIVQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEEE
GNFVSREQASQLKEGMTRDQVRYVLGSPLLTDMFHGNRWDYVFSFKRGNTNVVQERKLTV
CCCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCEEECCEEEE
WFEADRLAKWAGADDLPSEVELIAEIDGIKRPKKAAAEAAAAAGAAPATRAPSIPSAEMS
EEEHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
DRVQSSAGAKNAVDVTLPERRTGGGGTDTSVPPPATTSP
HHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973334 [H]