| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is yceI [C]
Identifier: 17547437
GI number: 17547437
Start: 2924254
End: 2924823
Strand: Reverse
Name: yceI [C]
Synonym: RSc2718
Alternate gene names: 17547437
Gene position: 2924823-2924254 (Counterclockwise)
Preceding gene: 17547438
Following gene: 17547436
Centisome position: 78.7
GC content: 64.56
Gene sequence:
>570_bases ATGATGAAACGAGTTGCGCGTCCCCGCGCCCTTGGGCTGATCGCCGCCGGCGCCTTGTCGATCGCCGCGCTGTCGGCCAT CGCCCAGGTGGATGCCGCCAAGAGCAGCGTGACGGCCACCGGCAAGCAACTGGGCGTGCCGATGGACATCAAGTTCGGCA AGTTCGATGCGGCCGTGAGCTACAACCCGGCCAACCTGGCGGCCTCCACGGCCAAGGTCGACATCGATGTGTCCAGCGTC GACGTGGGCGACAAGGCCTACAACGACGAACTGAAGAAGAAGGACTGGTTCGACGCCGCCAAGTATCCGAAGGCGACCTT CGTGTCGTCCGCGTTCAAGCCGGGTGCCGGCGGCAAGGTGGAAGTGGTCGGCAAGCTGACCATCAAGGGCGTCACGCAGG ACGTGACCGCGCCCTTCACCGTCAAGCAGGACGGCGCCAGCCAGGTGTTCGAGGGCGCGCTGCCGATCAAGCGCAATGCG TTCCACGTCGGCGATGGCGAGTGGAAGGACACGTCGGTGGTCGCCGACGACGTGACCATCAAGTTCCGTGTCGTTCTCGC CAAGAAGTAA
Upstream 100 bases:
>100_bases TGAAGCGCGCGGGTTCCGAATGCGCCGGCATCGCGCCGGCCTCCTGTTTTCCGTCCCGACCATGACTGCCGGCACAGGCC GGCCTGACAGAAGGAGTCTG
Downstream 100 bases:
>100_bases TTCGCGTCTTTTTCTGTCGTTCCCTTTTTCGCCCCCTCTCTCTGCAGGAGCTCTCTCATGAAGTTGCGTACCCTTGTCGC CGCACTGTCCGCCGTTGCCG
Product: signal peptide protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 189; Mature: 189
Protein sequence:
>189_residues MMKRVARPRALGLIAAGALSIAALSAIAQVDAAKSSVTATGKQLGVPMDIKFGKFDAAVSYNPANLAASTAKVDIDVSSV DVGDKAYNDELKKKDWFDAAKYPKATFVSSAFKPGAGGKVEVVGKLTIKGVTQDVTAPFTVKQDGASQVFEGALPIKRNA FHVGDGEWKDTSVVADDVTIKFRVVLAKK
Sequences:
>Translated_189_residues MMKRVARPRALGLIAAGALSIAALSAIAQVDAAKSSVTATGKQLGVPMDIKFGKFDAAVSYNPANLAASTAKVDIDVSSV DVGDKAYNDELKKKDWFDAAKYPKATFVSSAFKPGAGGKVEVVGKLTIKGVTQDVTAPFTVKQDGASQVFEGALPIKRNA FHVGDGEWKDTSVVADDVTIKFRVVLAKK >Mature_189_residues MMKRVARPRALGLIAAGALSIAALSAIAQVDAAKSSVTATGKQLGVPMDIKFGKFDAAVSYNPANLAASTAKVDIDVSSV DVGDKAYNDELKKKDWFDAAKYPKATFVSSAFKPGAGGKVEVVGKLTIKGVTQDVTAPFTVKQDGASQVFEGALPIKRNA FHVGDGEWKDTSVVADDVTIKFRVVLAKK
Specific function: Unknown
COG id: COG2353
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0312 family. Type 1 subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007372 [H]
Pfam domain/function: PF04264 YceI [H]
EC number: NA
Molecular weight: Translated: 19832; Mature: 19832
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKRVARPRALGLIAAGALSIAALSAIAQVDAAKSSVTATGKQLGVPMDIKFGKFDAAVS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHCCCCEEEEECCCCCEEE YNPANLAASTAKVDIDVSSVDVGDKAYNDELKKKDWFDAAKYPKATFVSSAFKPGAGGKV ECCHHHCCCEEEEEEEEEEECCCCCHHCHHHHHCCCCCHHCCCCHHHHHHCCCCCCCCEE EVVGKLTIKGVTQDVTAPFTVKQDGASQVFEGALPIKRNAFHVGDGEWKDTSVVADDVTI EEEEEEEEECCCCCCCCCEEEECCCHHHHHHCCCCCCCCEEECCCCCCCCCEEEECCEEE KFRVVLAKK EEEEEEECC >Mature Secondary Structure MMKRVARPRALGLIAAGALSIAALSAIAQVDAAKSSVTATGKQLGVPMDIKFGKFDAAVS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHCCCCEEEEECCCCCEEE YNPANLAASTAKVDIDVSSVDVGDKAYNDELKKKDWFDAAKYPKATFVSSAFKPGAGGKV ECCHHHCCCEEEEEEEEEEECCCCCHHCHHHHHCCCCCHHCCCCHHHHHHCCCCCCCCEE EVVGKLTIKGVTQDVTAPFTVKQDGASQVFEGALPIKRNAFHVGDGEWKDTSVVADDVTI EEEEEEEEECCCCCCCCCEEEECCCHHHHHHCCCCCCCCEEECCCCCCCCCEEEECCEEE KFRVVLAKK EEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA