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The map label for this gene is myfC [H]

Identifier: 17547412

GI number: 17547412

Start: 2898998

End: 2901262

Strand: Reverse

Name: myfC [H]

Synonym: RSc2693

Alternate gene names: 17547412

Gene position: 2901262-2898998 (Counterclockwise)

Preceding gene: 17547413

Following gene: 17547411

Centisome position: 78.07

GC content: 65.78

Gene sequence:

>2265_bases
ATGACACTCGCAAACGACGCGCCGGCGCCCAGCCGCACCGCCGCCAGCGATGTCGCCGAGCTGCTGCTGCAGTTCGACCT
CAACCAGCAGGGCCTGGACGACACCGTGTTGTTGCTCAAGACCAAGGGCGGCGAGCTGTATGCATCGGCAGAAGACCTCA
AGCGCTGGCGCCTGCGCCAGCCAGAGGCGACACCGCTGGCCCACAACAACGAGGTGTTCTACCCGCTCAAGGCCATCACG
GGGCTGTCGTATCAGCTTGACGAGACGCTCTTGACCGTGGCGGTGACGGCACCGGCGCAGGCCTTCCTGCCCAACGCCTT
CGACGAGGCGAACAAGCCGGTGGCGCTCAGCCTCAAGCCCGGCTTTGGCGGCTTCCTCAACTACGACCTGCTGGCAGAGC
ACGCCACGGGCCAGACCCGCTCATCAGGGCTGTTCGAGGCCGGTGTCTTCAACGGCTTGGGCGTGGGCGTTGCCAGCTTT
GTGGCCAACAGCGGTGACACTGAGCACCGGCTCATCCGCCTGGAAACCACCTGGACCAAGGACCTTCCGGATCATCTCTC
CAGCGTACGTCTGGGCGATTCGATCAGCCGGGCCGGCGCGTGGGGGCGCAGCGTGCGCTTTGGCGGCATTCAATACAGCA
CCAACTTCGCCGTGCAGCCCGGCTTTGTCGCATTGCCGCTGCAGAGCATCGGCGGGCAGGCCGCGCTTCCATCGACCGTC
GATGTCTACGTCAACAACGTGCTGAGTTCACGCAAGGACGTCGCACCGGGACCGTTCTCGATCACCAACGTGCCCGTGGT
GACGGGGCAGGGCGACGTGCGCGTCGTCGTGCGCGATCTGCTGGGGCGCGAACAGGTGATCAGCGTGCCGTTCTACGCGA
GCGCCAGCCTGCTTGCCAAGGGGCTGCACGATTTCTCGTACGAAGCCGGCGCCGAACGCAGGAACTTCGGCACCGATAGC
AACGACTATGGCCGGGCCTTCGCCGCGGCGACCCATCGCCTCGGTTTCACCGACTGGCTCACGGGCGAGGTTCACGCGGA
ATCCCAGCTCGAACGTCAGACTGTCGGCCTCGGCACGGTGATGCTGGCGCCGTCGGTTGGCGTTTTCAGTGCGGCGGCCG
CTGCCAGTCGGGGACGGCAGGGCAGTGGAGGCCTCGTCTCCGTTGGCTTCGAGCGGCAGGCCAGCCCCGTCAGCGTGGGT
GTGCATGCGCAACTTGCCAGCCCGCGCTTCACGCAGCTCGGGCTCGAACTGGACATGCCTGCACCGCGCCTGCTGAGCAG
CGTGAACGTCGGCATGGCGCTGCCGGGCGGCGGCTCGCTGGGGCTGGCCTATGTCTACCTGGACAACCGCGATGGCCATC
CGACCCAGCTCGCCTCGGCCAGCTATGGCACGCAGCTGGGGCGCTTCGGGTTCATCAGCCTGGCCCTCTCCAAGACGCTG
CATCAGCCCGGCGGCCTGATGGTCGGCCTGAACTGGACGCTGCCGCTGGGCGAGCGTACTACCACCTCCATCAACATGAC
CCAGCAACAGGGCCGCACCGAGGTGCAGGCGCAAGTGCAGCAAGGACTGCCGCCCGGCGATGGCTTTGGCTACAGCGTGC
GGGCCAGCCAGCTCGGCGCGTGGGACGCCGCCCTGAACGCACAGAATCGCGTCGGCACCTATCTGCTGGAAGCCGCCGGC
GATCGTGGGCAGACGGGCGTGCGGATGGGTGCCTCGGGCGGCATCGCGATACTCGATGGCCTGCACCTGAGCCGCCGCAT
CTCCGACAGCTTTGCCGTGGTCAAGGTGCCCGATTTCCCCAACGTACGGATCTATGCCGACAACCAGCTCGTCGCCAAAA
CCAACGCCAGCGGCGAAGCGCTCATCCCCCGCCTGCGTGCATACGAAAAGAATGCGATTTCGCTCGAGCAGTTGGATCTG
CCCTTCGATGCGAAGGTCGGGACCCTGTCGCTGGACGCGGTGCCGTACTACCGCAGCGGCATGGTGCTGGATTTTCCGGT
CACGCATGCGCATGACGCGCTGATGACGCTGAAGTTGGAGAACGGCAGCGACCTGCCTGCCGGCGCCACGGTGCAGATCT
CCGGACAGAAAGAGGCGTTTCCGGTCGGTAACGACGGCGTGGTCTATCTCACCGGGCTGGCAGCGCAAAACCGTCTGCAA
GCCAACTGGCGCGGACAGTCGTGTGATATCTCGGTGCCATTCACACCGGGCGCCGACCCATTGCCTGATCTTGGCATTTT
CGTTTGCAAAGGAGTCCGACCATGA

Upstream 100 bases:

>100_bases
TACTCCGATGCTGGCGACATCGATTCGGCCCTGGCGCCCGAGACCCGCTAAGGCGTTCATCGCCCTGGCGATCGCGGCAA
CCGTCTTATCGGGAGCAGGC

Downstream 100 bases:

>100_bases
CACGCTTCCCAGACACGATGCGGCCGCGCCGCGTTTCTGCCCGGACGCTGTTGGCCGGTGCAGTGCTGGTCGCCCTGGCG
TCATGGGCACCGGGTGCACT

Product: outer membrane usher transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 754; Mature: 753

Protein sequence:

>754_residues
MTLANDAPAPSRTAASDVAELLLQFDLNQQGLDDTVLLLKTKGGELYASAEDLKRWRLRQPEATPLAHNNEVFYPLKAIT
GLSYQLDETLLTVAVTAPAQAFLPNAFDEANKPVALSLKPGFGGFLNYDLLAEHATGQTRSSGLFEAGVFNGLGVGVASF
VANSGDTEHRLIRLETTWTKDLPDHLSSVRLGDSISRAGAWGRSVRFGGIQYSTNFAVQPGFVALPLQSIGGQAALPSTV
DVYVNNVLSSRKDVAPGPFSITNVPVVTGQGDVRVVVRDLLGREQVISVPFYASASLLAKGLHDFSYEAGAERRNFGTDS
NDYGRAFAAATHRLGFTDWLTGEVHAESQLERQTVGLGTVMLAPSVGVFSAAAAASRGRQGSGGLVSVGFERQASPVSVG
VHAQLASPRFTQLGLELDMPAPRLLSSVNVGMALPGGGSLGLAYVYLDNRDGHPTQLASASYGTQLGRFGFISLALSKTL
HQPGGLMVGLNWTLPLGERTTTSINMTQQQGRTEVQAQVQQGLPPGDGFGYSVRASQLGAWDAALNAQNRVGTYLLEAAG
DRGQTGVRMGASGGIAILDGLHLSRRISDSFAVVKVPDFPNVRIYADNQLVAKTNASGEALIPRLRAYEKNAISLEQLDL
PFDAKVGTLSLDAVPYYRSGMVLDFPVTHAHDALMTLKLENGSDLPAGATVQISGQKEAFPVGNDGVVYLTGLAAQNRLQ
ANWRGQSCDISVPFTPGADPLPDLGIFVCKGVRP

Sequences:

>Translated_754_residues
MTLANDAPAPSRTAASDVAELLLQFDLNQQGLDDTVLLLKTKGGELYASAEDLKRWRLRQPEATPLAHNNEVFYPLKAIT
GLSYQLDETLLTVAVTAPAQAFLPNAFDEANKPVALSLKPGFGGFLNYDLLAEHATGQTRSSGLFEAGVFNGLGVGVASF
VANSGDTEHRLIRLETTWTKDLPDHLSSVRLGDSISRAGAWGRSVRFGGIQYSTNFAVQPGFVALPLQSIGGQAALPSTV
DVYVNNVLSSRKDVAPGPFSITNVPVVTGQGDVRVVVRDLLGREQVISVPFYASASLLAKGLHDFSYEAGAERRNFGTDS
NDYGRAFAAATHRLGFTDWLTGEVHAESQLERQTVGLGTVMLAPSVGVFSAAAAASRGRQGSGGLVSVGFERQASPVSVG
VHAQLASPRFTQLGLELDMPAPRLLSSVNVGMALPGGGSLGLAYVYLDNRDGHPTQLASASYGTQLGRFGFISLALSKTL
HQPGGLMVGLNWTLPLGERTTTSINMTQQQGRTEVQAQVQQGLPPGDGFGYSVRASQLGAWDAALNAQNRVGTYLLEAAG
DRGQTGVRMGASGGIAILDGLHLSRRISDSFAVVKVPDFPNVRIYADNQLVAKTNASGEALIPRLRAYEKNAISLEQLDL
PFDAKVGTLSLDAVPYYRSGMVLDFPVTHAHDALMTLKLENGSDLPAGATVQISGQKEAFPVGNDGVVYLTGLAAQNRLQ
ANWRGQSCDISVPFTPGADPLPDLGIFVCKGVRP
>Mature_753_residues
TLANDAPAPSRTAASDVAELLLQFDLNQQGLDDTVLLLKTKGGELYASAEDLKRWRLRQPEATPLAHNNEVFYPLKAITG
LSYQLDETLLTVAVTAPAQAFLPNAFDEANKPVALSLKPGFGGFLNYDLLAEHATGQTRSSGLFEAGVFNGLGVGVASFV
ANSGDTEHRLIRLETTWTKDLPDHLSSVRLGDSISRAGAWGRSVRFGGIQYSTNFAVQPGFVALPLQSIGGQAALPSTVD
VYVNNVLSSRKDVAPGPFSITNVPVVTGQGDVRVVVRDLLGREQVISVPFYASASLLAKGLHDFSYEAGAERRNFGTDSN
DYGRAFAAATHRLGFTDWLTGEVHAESQLERQTVGLGTVMLAPSVGVFSAAAAASRGRQGSGGLVSVGFERQASPVSVGV
HAQLASPRFTQLGLELDMPAPRLLSSVNVGMALPGGGSLGLAYVYLDNRDGHPTQLASASYGTQLGRFGFISLALSKTLH
QPGGLMVGLNWTLPLGERTTTSINMTQQQGRTEVQAQVQQGLPPGDGFGYSVRASQLGAWDAALNAQNRVGTYLLEAAGD
RGQTGVRMGASGGIAILDGLHLSRRISDSFAVVKVPDFPNVRIYADNQLVAKTNASGEALIPRLRAYEKNAISLEQLDLP
FDAKVGTLSLDAVPYYRSGMVLDFPVTHAHDALMTLKLENGSDLPAGATVQISGQKEAFPVGNDGVVYLTGLAAQNRLQA
NWRGQSCDISVPFTPGADPLPDLGIFVCKGVRP

Specific function: Involved in the export and assembly of the myfA fimbrial subunit [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1788427, Length=569, Percent_Identity=21.792618629174, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1789533, Length=290, Percent_Identity=24.4827586206897, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 79869; Mature: 79738

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLANDAPAPSRTAASDVAELLLQFDLNQQGLDDTVLLLKTKGGELYASAEDLKRWRLRQ
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEECHHHHHHHHCCC
PEATPLAHNNEVFYPLKAITGLSYQLDETLLTVAVTAPAQAFLPNAFDEANKPVALSLKP
CCCCCCCCCCCEEEEHHHHCCCCEEECCEEEEEEEECCHHHHCCCCHHHCCCCEEEEECC
GFGGFLNYDLLAEHATGQTRSSGLFEAGVFNGLGVGVASFVANSGDTEHRLIRLETTWTK
CCCCCCCHHHHHHCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCC
DLPDHLSSVRLGDSISRAGAWGRSVRFGGIQYSTNFAVQPGFVALPLQSIGGQAALPSTV
CHHHHHHHHHCCCCHHHCCCCCCCEEECCEEEECCEEECCCEEEEEHHHCCCCCCCCCHH
DVYVNNVLSSRKDVAPGPFSITNVPVVTGQGDVRVVVRDLLGREQVISVPFYASASLLAK
HHHHHHHHHCCCCCCCCCEEECCEEEEECCCCHHHHHHHHCCCCEEEECCCHHHHHHHHH
GLHDFSYEAGAERRNFGTDSNDYGRAFAAATHRLGFTDWLTGEVHAESQLERQTVGLGTV
HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHHCCCEEE
MLAPSVGVFSAAAAASRGRQGSGGLVSVGFERQASPVSVGVHAQLASPRFTQLGLELDMP
EECCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCEEEECEEECCC
APRLLSSVNVGMALPGGGSLGLAYVYLDNRDGHPTQLASASYGTQLGRFGFISLALSKTL
CHHHHHHCCCCEECCCCCCEEEEEEEEECCCCCCHHCCCCHHCCHHCCHHHHHHHHHHHH
HQPGGLMVGLNWTLPLGERTTTSINMTQQQGRTEVQAQVQQGLPPGDGFGYSVRASQLGA
CCCCCEEEEEEEEECCCCCCEEEEEEHHHCCHHHHHHHHHHCCCCCCCCCEEEEHHHCCC
WDAALNAQNRVGTYLLEAAGDRGQTGVRMGASGGIAILDGLHLSRRISDSFAVVKVPDFP
HHHHCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEECCHHHHHCCCCEEEEECCCCC
NVRIYADNQLVAKTNASGEALIPRLRAYEKNAISLEQLDLPFDAKVGTLSLDAVPYYRSG
CEEEEECCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEECCCCHHHCC
MVLDFPVTHAHDALMTLKLENGSDLPAGATVQISGQKEAFPVGNDGVVYLTGLAAQNRLQ
EEEEECCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCEE
ANWRGQSCDISVPFTPGADPLPDLGIFVCKGVRP
ECCCCCCCEEEECCCCCCCCCCCCCCEEECCCCC
>Mature Secondary Structure 
TLANDAPAPSRTAASDVAELLLQFDLNQQGLDDTVLLLKTKGGELYASAEDLKRWRLRQ
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEECHHHHHHHHCCC
PEATPLAHNNEVFYPLKAITGLSYQLDETLLTVAVTAPAQAFLPNAFDEANKPVALSLKP
CCCCCCCCCCCEEEEHHHHCCCCEEECCEEEEEEEECCHHHHCCCCHHHCCCCEEEEECC
GFGGFLNYDLLAEHATGQTRSSGLFEAGVFNGLGVGVASFVANSGDTEHRLIRLETTWTK
CCCCCCCHHHHHHCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCC
DLPDHLSSVRLGDSISRAGAWGRSVRFGGIQYSTNFAVQPGFVALPLQSIGGQAALPSTV
CHHHHHHHHHCCCCHHHCCCCCCCEEECCEEEECCEEECCCEEEEEHHHCCCCCCCCCHH
DVYVNNVLSSRKDVAPGPFSITNVPVVTGQGDVRVVVRDLLGREQVISVPFYASASLLAK
HHHHHHHHHCCCCCCCCCEEECCEEEEECCCCHHHHHHHHCCCCEEEECCCHHHHHHHHH
GLHDFSYEAGAERRNFGTDSNDYGRAFAAATHRLGFTDWLTGEVHAESQLERQTVGLGTV
HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHHCCCEEE
MLAPSVGVFSAAAAASRGRQGSGGLVSVGFERQASPVSVGVHAQLASPRFTQLGLELDMP
EECCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCEEEECEEECCC
APRLLSSVNVGMALPGGGSLGLAYVYLDNRDGHPTQLASASYGTQLGRFGFISLALSKTL
CHHHHHHCCCCEECCCCCCEEEEEEEEECCCCCCHHCCCCHHCCHHCCHHHHHHHHHHHH
HQPGGLMVGLNWTLPLGERTTTSINMTQQQGRTEVQAQVQQGLPPGDGFGYSVRASQLGA
CCCCCEEEEEEEEECCCCCCEEEEEEHHHCCHHHHHHHHHHCCCCCCCCCEEEEHHHCCC
WDAALNAQNRVGTYLLEAAGDRGQTGVRMGASGGIAILDGLHLSRRISDSFAVVKVPDFP
HHHHCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEECCHHHHHCCCCEEEEECCCCC
NVRIYADNQLVAKTNASGEALIPRLRAYEKNAISLEQLDLPFDAKVGTLSLDAVPYYRSG
CEEEEECCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEECCCCHHHCC
MVLDFPVTHAHDALMTLKLENGSDLPAGATVQISGQKEAFPVGNDGVVYLTGLAAQNRLQ
EEEEECCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCEE
ANWRGQSCDISVPFTPGADPLPDLGIFVCKGVRP
ECCCCCCCEEEECCCCCCCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8105362 [H]