Click here to switch to the map view.

The map label for this gene is rnk [H]

Identifier: 17547355

GI number: 17547355

Start: 2840328

End: 2840732

Strand: Reverse

Name: rnk [H]

Synonym: RSc2636

Alternate gene names: 17547355

Gene position: 2840732-2840328 (Counterclockwise)

Preceding gene: 17547356

Following gene: 17547354

Centisome position: 76.44

GC content: 69.63

Gene sequence:

>405_bases
ATGTCCGCAGCCGTCATCTACCTGACCGAGCTCGACCTCACCCGACTGGAAAACGCCGCCGTTCGCGCCGGCAGCGGCTC
GCCGCTGGCCGGGCTGGTCGACGACCTGATTGTCCGCGCCAACGTTGTTCCCGGCGACAGGATTCCCGCCGACGTGGTGA
CGATGAATTCAGTGGTGCGCGTGCACGCTGGCGCCGGTACGGCCCAGGAGTGGACGCTGGTCTATCCGGACGAGGCCAAC
CTGGCCGCGGCCAGGCTCTCGGTGCTGTCGCCGATGGGCGCGGCGCTGCTCGGCGGCCGCGCGGGCGACGAGGTGCACTA
TGCCGCGCCGGACGGCTCTACGCACGCACTGCGGATCGACGCGATCGTCTTTCAGCCCGAGGCAGCCGGCCACTACACCT
TGTGA

Upstream 100 bases:

>100_bases
TTGCCGCCGGGCCCATTCCCTCCGCTTCGATACCGCCGCCGGCCTGTGCCGCGCCGCCGGCGCCCTTGTCCGCAACAGAC
CCGATGCATTGGAGATCGCC

Downstream 100 bases:

>100_bases
TCTGCGATGCCCGGGGCGGCCGGCTTCGGGCGCACTGCAGCGGGCCGCGGTGAGTCGTCGGGGGTTCCCGGCCTTCCAGT
GAGTTGTCTGTTAAGAATCA

Product: regulator of nucleoside diphosphate kinase transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MSAAVIYLTELDLTRLENAAVRAGSGSPLAGLVDDLIVRANVVPGDRIPADVVTMNSVVRVHAGAGTAQEWTLVYPDEAN
LAAARLSVLSPMGAALLGGRAGDEVHYAAPDGSTHALRIDAIVFQPEAAGHYTL

Sequences:

>Translated_134_residues
MSAAVIYLTELDLTRLENAAVRAGSGSPLAGLVDDLIVRANVVPGDRIPADVVTMNSVVRVHAGAGTAQEWTLVYPDEAN
LAAARLSVLSPMGAALLGGRAGDEVHYAAPDGSTHALRIDAIVFQPEAAGHYTL
>Mature_133_residues
SAAVIYLTELDLTRLENAAVRAGSGSPLAGLVDDLIVRANVVPGDRIPADVVTMNSVVRVHAGAGTAQEWTLVYPDEANL
AAARLSVLSPMGAALLGGRAGDEVHYAAPDGSTHALRIDAIVFQPEAAGHYTL

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=136, Percent_Identity=38.2352941176471, Blast_Score=84, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 13857; Mature: 13726

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS00830 GREAB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAVIYLTELDLTRLENAAVRAGSGSPLAGLVDDLIVRANVVPGDRIPADVVTMNSVVR
CCEEEEEEEECCHHHHCCCEEECCCCCCHHHHHHHHHHEECCCCCCCCCCCEEEECCEEE
VHAGAGTAQEWTLVYPDEANLAAARLSVLSPMGAALLGGRAGDEVHYAAPDGSTHALRID
EECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHCCCCCCCCEEEECCCCCCEEEEEE
AIVFQPEAAGHYTL
EEEECCCCCCCCCC
>Mature Secondary Structure 
SAAVIYLTELDLTRLENAAVRAGSGSPLAGLVDDLIVRANVVPGDRIPADVVTMNSVVR
CEEEEEEEECCHHHHCCCEEECCCCCCHHHHHHHHHHEECCCCCCCCCCCEEEECCEEE
VHAGAGTAQEWTLVYPDEANLAAARLSVLSPMGAALLGGRAGDEVHYAAPDGSTHALRID
EECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHCCCCCCCCEEEECCCCCCEEEEEE
AIVFQPEAAGHYTL
EEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]