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The map label for this gene is 17547325

Identifier: 17547325

GI number: 17547325

Start: 2809180

End: 2810025

Strand: Reverse

Name: 17547325

Synonym: RSc2606

Alternate gene names: NA

Gene position: 2810025-2809180 (Counterclockwise)

Preceding gene: 17547326

Following gene: 17547324

Centisome position: 75.61

GC content: 67.02

Gene sequence:

>846_bases
ATGTCCAGCCCGCCAGGGCAAGCCTTGCCGCAGCGCGAACAGCTCGACCTGTTCCGCGCGCTGCCGGGCGACATGGCACC
CCGCGACAGCCAGGACTTGATGGCCTTTCCGTTCTTCTCGCTAGCGAAGTCACGGCGCACGGCGCCGATCGACTTCCGCG
CCGGCGGTATCACCATCCGCGTGGAAGGCACGGCCGAGCATGGCATCGCAACGATATGGGATGCCGACGTGTTGATATGG
GCCGCCTCGCAGATCGTGGAGGCGCGCGACGCGGGCATCCGCCCGTCGCGCTGGATACGCGCCACGCCCTACGAGATCTT
GCGCTTCATCGGGCGCAGCACATCGCTCAACGACTACCAGCGCCTGAAAGCGGCGCTCGACCGGCTGCAATCGACCAGCA
TTGCCACGTCCATCCGCGAGACGACCGGCCGGCGGCTGCACCGTTTCTCGTGGATCAACGAATGGCGCGAGCTGGCCGAC
GCCAGCGGCAAGCCGCTGGGCATCGAACTGATTCTGCCGGACTGGTTCTATGCCGGCGTGCTCGATGCCGCGCTGGTGCT
GACCATCGACCCGGCTTATTTCCGCTTGAAGGGCGGCATCGAACGCTGGCTGTACCGCCTGGTGCGCAAGCACGGCGGGC
GGCAGGAACACGGCTGGCAATTCGACTTCAAGCACCTGCACCGCAAGTCGGGCAGCGCGGCGCGCTTCTCGGACTTCGCC
TACGACCTGCGCGCCCTCGTAGCGCGGCAGTCGCTGCCCGGCTACGTCCTGGGCATCGAGCGAATGCCGGACGGCGGGCA
AGAACTGCTGACCTTCCGGCCCGTGCTGCATACGGCACGGGGATAA

Upstream 100 bases:

>100_bases
AGCGCAGCTACGAGGCGACGTCCGACCCGGAATATGCAGAACGCCATGCGGGCGACTACCGTGATGGCCGCTGATCGTCG
GCGCGTGGGTGGCCTTCGCC

Downstream 100 bases:

>100_bases
CTGCGGGAAAAGGTGTGGACGGACTCGTGCTATCAGGAGTACGGGGTATCGTGCTATCGGGAGTACGCCTATCGTGCTAT
CAGGAGTACGAAAACGCCGG

Product: replication initiator and transcription repressor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MSSPPGQALPQREQLDLFRALPGDMAPRDSQDLMAFPFFSLAKSRRTAPIDFRAGGITIRVEGTAEHGIATIWDADVLIW
AASQIVEARDAGIRPSRWIRATPYEILRFIGRSTSLNDYQRLKAALDRLQSTSIATSIRETTGRRLHRFSWINEWRELAD
ASGKPLGIELILPDWFYAGVLDAALVLTIDPAYFRLKGGIERWLYRLVRKHGGRQEHGWQFDFKHLHRKSGSAARFSDFA
YDLRALVARQSLPGYVLGIERMPDGGQELLTFRPVLHTARG

Sequences:

>Translated_281_residues
MSSPPGQALPQREQLDLFRALPGDMAPRDSQDLMAFPFFSLAKSRRTAPIDFRAGGITIRVEGTAEHGIATIWDADVLIW
AASQIVEARDAGIRPSRWIRATPYEILRFIGRSTSLNDYQRLKAALDRLQSTSIATSIRETTGRRLHRFSWINEWRELAD
ASGKPLGIELILPDWFYAGVLDAALVLTIDPAYFRLKGGIERWLYRLVRKHGGRQEHGWQFDFKHLHRKSGSAARFSDFA
YDLRALVARQSLPGYVLGIERMPDGGQELLTFRPVLHTARG
>Mature_280_residues
SSPPGQALPQREQLDLFRALPGDMAPRDSQDLMAFPFFSLAKSRRTAPIDFRAGGITIRVEGTAEHGIATIWDADVLIWA
ASQIVEARDAGIRPSRWIRATPYEILRFIGRSTSLNDYQRLKAALDRLQSTSIATSIRETTGRRLHRFSWINEWRELADA
SGKPLGIELILPDWFYAGVLDAALVLTIDPAYFRLKGGIERWLYRLVRKHGGRQEHGWQFDFKHLHRKSGSAARFSDFAY
DLRALVARQSLPGYVLGIERMPDGGQELLTFRPVLHTARG

Specific function: Unknown

COG id: COG5534

COG function: function code L; Plasmid replication initiator protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BRCT domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001357
- InterPro:   IPR018777 [H]

Pfam domain/function: PF10134 RPA [H]

EC number: NA

Molecular weight: Translated: 31812; Mature: 31681

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPPGQALPQREQLDLFRALPGDMAPRDSQDLMAFPFFSLAKSRRTAPIDFRAGGITIR
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEE
VEGTAEHGIATIWDADVLIWAASQIVEARDAGIRPSRWIRATPYEILRFIGRSTSLNDYQ
EECCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHCCCCCCHHHH
RLKAALDRLQSTSIATSIRETTGRRLHRFSWINEWRELADASGKPLGIELILPDWFYAGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHH
LDAALVLTIDPAYFRLKGGIERWLYRLVRKHGGRQEHGWQFDFKHLHRKSGSAARFSDFA
HHHEEEEEECCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHH
YDLRALVARQSLPGYVLGIERMPDGGQELLTFRPVLHTARG
HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSPPGQALPQREQLDLFRALPGDMAPRDSQDLMAFPFFSLAKSRRTAPIDFRAGGITIR
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEE
VEGTAEHGIATIWDADVLIWAASQIVEARDAGIRPSRWIRATPYEILRFIGRSTSLNDYQ
EECCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHCCCCCCHHHH
RLKAALDRLQSTSIATSIRETTGRRLHRFSWINEWRELADASGKPLGIELILPDWFYAGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHH
LDAALVLTIDPAYFRLKGGIERWLYRLVRKHGGRQEHGWQFDFKHLHRKSGSAARFSDFA
HHHEEEEEECCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHH
YDLRALVARQSLPGYVLGIERMPDGGQELLTFRPVLHTARG
HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12219091 [H]