| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17547230
Identifier: 17547230
GI number: 17547230
Start: 2718250
End: 2718726
Strand: Direct
Name: 17547230
Synonym: RSc2511
Alternate gene names: NA
Gene position: 2718250-2718726 (Clockwise)
Preceding gene: 17547227
Following gene: 17547231
Centisome position: 73.14
GC content: 67.09
Gene sequence:
>477_bases ATGACCACTCGTGCGATCCGGCGCAAGCTGACCGCGCTTGCCTGGCTGCTGGCCGGCACCGCGCTTCCCGCCCTGGCGCA GACGCCGTCCGTCCCCCAGGGAAACACCGTTGCCGCAACCGATGGCGGAATCGACGTCGTGCAGCTCAAGCCGGCGGTCG AAGCCGTGGTCAACGCGGACTACCCGCACCTCAATGCGCGGTGCAAAGACCTGCATACGCATCCGGAGCCGGCCTTCCAG GAAACGCGCACCGCCGCCCGGCTGGCCGCCGAGATGCGCAAGCTCGGCTTCGACGTGACGGAACAGATCGGCAGGACCGG CGTGGCGGCGATCTATCGTAACGAGCCAGGGCCTACCGTCCTGGTGCGCACCGAGCTCGATGCCCTGCCGATGGAAGAAA AGACCGGCGTCGAAGCCATGTCGCTCACGGTGATGCATACGCTGCAGTGGAACAAGGCCGCCGGCCAATCGAGCTAG
Upstream 100 bases:
>100_bases GGGCTGCCCCGGAGGGCACCCGCCGGCATCCAGTGGCATCATCGATTCGCTTGACGAAGCAACAATATCGCATCGACACC ATGCGATGCAAGGAGACCCC
Downstream 100 bases:
>100_bases CATGCGAAGGTGCGTGGCCCGGGTCGAGGCCGCGCCCGAGCCTTTTTCATTGACGGGAGTCCCCATGTTTGTCCGCTTCA TCCGCAGCACCGCCCTGCTG
Product: signal peptide protein
Products: NA
Alternate protein names: Peptidase; Zinc Metallopeptidase; Metal-Dependent Amidase/Aminoacylase/Carboxypeptidase; Amidohydrolase Family Protein; Amidohydrolase Subfamily; Hydrolase; N-Acyl-L-Amino Acid Amidohydrolase; M20 Subfamily Protein; Peptidase Protein; Hippurate Hydrolase; Amidohydrolase-Family Protein; Carboxypeptidase; Amidase/Aminoacylase/Peptidase Family Protein; Metal-Dependentamidase/Aminoacylase/Carboxypeptidase; Signal Peptide Protein; Hippurate Hydrolase Protein; LOW QUALITY PROTEIN Protein; Hyppurate Hydrolase Protein
Number of amino acids: Translated: 158; Mature: 157
Protein sequence:
>158_residues MTTRAIRRKLTALAWLLAGTALPALAQTPSVPQGNTVAATDGGIDVVQLKPAVEAVVNADYPHLNARCKDLHTHPEPAFQ ETRTAARLAAEMRKLGFDVTEQIGRTGVAAIYRNEPGPTVLVRTELDALPMEEKTGVEAMSLTVMHTLQWNKAAGQSS
Sequences:
>Translated_158_residues MTTRAIRRKLTALAWLLAGTALPALAQTPSVPQGNTVAATDGGIDVVQLKPAVEAVVNADYPHLNARCKDLHTHPEPAFQ ETRTAARLAAEMRKLGFDVTEQIGRTGVAAIYRNEPGPTVLVRTELDALPMEEKTGVEAMSLTVMHTLQWNKAAGQSS >Mature_157_residues TTRAIRRKLTALAWLLAGTALPALAQTPSVPQGNTVAATDGGIDVVQLKPAVEAVVNADYPHLNARCKDLHTHPEPAFQE TRTAARLAAEMRKLGFDVTEQIGRTGVAAIYRNEPGPTVLVRTELDALPMEEKTGVEAMSLTVMHTLQWNKAAGQSS
Specific function: Unknown
COG id: COG1473
COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16966; Mature: 16834
Theoretical pI: Translated: 7.68; Mature: 7.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTRAIRRKLTALAWLLAGTALPALAQTPSVPQGNTVAATDGGIDVVQLKPAVEAVVNAD CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEECHHHHHHHCCC YPHLNARCKDLHTHPEPAFQETRTAARLAAEMRKLGFDVTEQIGRTGVAAIYRNEPGPTV CCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEECCCCCEE LVRTELDALPMEEKTGVEAMSLTVMHTLQWNKAAGQSS EEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure TTRAIRRKLTALAWLLAGTALPALAQTPSVPQGNTVAATDGGIDVVQLKPAVEAVVNAD CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEECHHHHHHHCCC YPHLNARCKDLHTHPEPAFQETRTAARLAAEMRKLGFDVTEQIGRTGVAAIYRNEPGPTV CCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEECCCCCEE LVRTELDALPMEEKTGVEAMSLTVMHTLQWNKAAGQSS EEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA