| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is ygfF [H]
Identifier: 17547223
GI number: 17547223
Start: 2710733
End: 2711479
Strand: Reverse
Name: ygfF [H]
Synonym: RSc2504
Alternate gene names: 17547223
Gene position: 2711479-2710733 (Counterclockwise)
Preceding gene: 17547228
Following gene: 17547221
Centisome position: 72.96
GC content: 73.76
Gene sequence:
>747_bases ATGTCCAAGACCATCGTCATCACCGGCGGCAGCAGGGGCATCGGCCGCGCCACGGCGGTTCTGTGCGCGCGGCGCGGGTG GTCCGTGGCGATCCAGTATCGCGGCAACCGGCAGGCCGCCGACGAGACGGCGGGCCTCGTCGAGCAGGCCGGCGGCCGGC TGCTGGCGGTGCAGGGCGATGTGTCGAGCGAGGCGGATGTGATGGCGCTGTTCGAGGCGGCGCAGGACCGCTTCGGCGCG CTGCACGGCGTGGTCAACAACGCCGGCATCGTGGCGCCCGCGCAGGACGTGGCCGACATGAGCGCACAGCGGCTGCGCGC GATATTCGAGACCAATGTGCTGGGCGCGTTCCTGGTGGCGCGCGAAGCGGCGCGGCGGCTGTCGACCGCGCGCGGCGGCG CGGGCGGTGCGCTGGTGAATGTGTCTTCGGCGGCGGCGCGGCTCGGCTCGCCGCACGAATATGTCGACTACGCCGCCTCC AAGGGCGCGGTGGACACCATGACGCTGGGCCTGGCGCGCGAACTGGGCCGCGAGGGTGTGCGCGTCAACGCGGTGCGCCC CGGCCTGATCGACACCGAGATCCACGCTTGCGGCGGCCAGCCGGATCGTGCCCAGCGCCTGGGTGCCGCCACGCCGATGG GCCGGCCCGGCACCGCCGCGGAGGTGGCCGAGACCATCGTCTGGCTGCTGTCGGATGCGGCGTCGTACGTGACGGGGGCG CTGCTGGACTGCTCAGGCGGGCGCTGA
Upstream 100 bases:
>100_bases GCGTTGGCCGGATTCGGACATTTCCCTCGGTCACACGCCGCCCTCGGAAGGCGGCCGCGGCAGGCACAATGCGGGTTCGA CACCACTTCAGGAGCGGCGT
Downstream 100 bases:
>100_bases CGCGTCAGGCATCGGCCCCGGCGCGGAAGGTGTCGCACTGCCGGATATCGCCGCCGTCGAAGCCCTGGCGGAACCAGTGC ATGCGCTGTTCCGAGGTGCC
Product: glucose-1-dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 248; Mature: 247
Protein sequence:
>248_residues MSKTIVITGGSRGIGRATAVLCARRGWSVAIQYRGNRQAADETAGLVEQAGGRLLAVQGDVSSEADVMALFEAAQDRFGA LHGVVNNAGIVAPAQDVADMSAQRLRAIFETNVLGAFLVAREAARRLSTARGGAGGALVNVSSAAARLGSPHEYVDYAAS KGAVDTMTLGLARELGREGVRVNAVRPGLIDTEIHACGGQPDRAQRLGAATPMGRPGTAAEVAETIVWLLSDAASYVTGA LLDCSGGR
Sequences:
>Translated_248_residues MSKTIVITGGSRGIGRATAVLCARRGWSVAIQYRGNRQAADETAGLVEQAGGRLLAVQGDVSSEADVMALFEAAQDRFGA LHGVVNNAGIVAPAQDVADMSAQRLRAIFETNVLGAFLVAREAARRLSTARGGAGGALVNVSSAAARLGSPHEYVDYAAS KGAVDTMTLGLARELGREGVRVNAVRPGLIDTEIHACGGQPDRAQRLGAATPMGRPGTAAEVAETIVWLLSDAASYVTGA LLDCSGGR >Mature_247_residues SKTIVITGGSRGIGRATAVLCARRGWSVAIQYRGNRQAADETAGLVEQAGGRLLAVQGDVSSEADVMALFEAAQDRFGAL HGVVNNAGIVAPAQDVADMSAQRLRAIFETNVLGAFLVAREAARRLSTARGGAGGALVNVSSAAARLGSPHEYVDYAASK GAVDTMTLGLARELGREGVRVNAVRPGLIDTEIHACGGQPDRAQRLGAATPMGRPGTAAEVAETIVWLLSDAASYVTGAL LDCSGGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=251, Percent_Identity=35.8565737051793, Blast_Score=124, Evalue=8e-29, Organism=Homo sapiens, GI15277342, Length=250, Percent_Identity=32.8, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=31.2252964426877, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI59889578, Length=213, Percent_Identity=37.0892018779343, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=31.3253012048193, Blast_Score=90, Evalue=1e-18, Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=32.520325203252, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI210032110, Length=193, Percent_Identity=28.4974093264249, Blast_Score=74, Evalue=8e-14, Organism=Homo sapiens, GI109715829, Length=247, Percent_Identity=27.5303643724696, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI4758504, Length=251, Percent_Identity=28.6852589641434, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI4503301, Length=204, Percent_Identity=28.921568627451, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI31542939, Length=195, Percent_Identity=29.7435897435897, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=27.1255060728745, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=53.4979423868313, Blast_Score=267, Evalue=5e-73, Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=35.1020408163265, Blast_Score=136, Evalue=1e-33, Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=33.2, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=31.8367346938775, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=31.0204081632653, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=30.1204819277108, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=31.9672131147541, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=30.1204819277108, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=27.6422764227642, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787891, Length=247, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87082100, Length=246, Percent_Identity=30.8943089430894, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1789057, Length=263, Percent_Identity=26.615969581749, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786812, Length=251, Percent_Identity=31.8725099601594, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787526, Length=249, Percent_Identity=26.9076305220884, Blast_Score=72, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=34.5098039215686, Blast_Score=120, Evalue=5e-28, Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=35.4581673306773, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=33.8709677419355, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=31.9391634980989, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=32.6612903225806, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17562904, Length=258, Percent_Identity=29.4573643410853, Blast_Score=97, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=30.952380952381, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=31.1023622047244, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=31.5175097276265, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=31.6981132075472, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI72000259, Length=267, Percent_Identity=31.0861423220974, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=33.0645161290323, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=28.8, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=29.5454545454545, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=31.2977099236641, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=30.6201550387597, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17538182, Length=235, Percent_Identity=30.2127659574468, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=31.3207547169811, Blast_Score=88, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17565030, Length=257, Percent_Identity=29.9610894941634, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17562910, Length=257, Percent_Identity=30.7392996108949, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17544670, Length=247, Percent_Identity=28.7449392712551, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=29.1187739463602, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=30.5343511450382, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=30.7116104868914, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=29.811320754717, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17560676, Length=244, Percent_Identity=27.4590163934426, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17561272, Length=243, Percent_Identity=30.8641975308642, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=29.8850574712644, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=30.1526717557252, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI71982365, Length=197, Percent_Identity=28.4263959390863, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17564282, Length=249, Percent_Identity=28.1124497991968, Blast_Score=67, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=28.8537549407115, Blast_Score=81, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6323882, Length=233, Percent_Identity=28.3261802575107, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6322226, Length=196, Percent_Identity=28.0612244897959, Blast_Score=67, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=195, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=6e-12, Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=36.5079365079365, Blast_Score=120, Evalue=6e-28, Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=36.5079365079365, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=35.1778656126482, Blast_Score=118, Evalue=3e-27, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=33.0677290836653, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24639444, Length=255, Percent_Identity=35.6862745098039, Blast_Score=107, Evalue=8e-24, Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=30.6772908366534, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=32.156862745098, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI24644337, Length=206, Percent_Identity=32.0388349514563, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=30.5220883534137, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI21357673, Length=219, Percent_Identity=29.6803652968037, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24640492, Length=214, Percent_Identity=26.1682242990654, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI24641232, Length=195, Percent_Identity=28.7179487179487, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24663911, Length=235, Percent_Identity=28.936170212766, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI116007236, Length=238, Percent_Identity=29.8319327731092, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641388, Length=210, Percent_Identity=30.952380952381, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI28571387, Length=196, Percent_Identity=30.1020408163265, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25441; Mature: 25310
Theoretical pI: Translated: 8.07; Mature: 8.07
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTIVITGGSRGIGRATAVLCARRGWSVAIQYRGNRQAADETAGLVEQAGGRLLAVQGD CCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECC VSSEADVMALFEAAQDRFGALHGVVNNAGIVAPAQDVADMSAQRLRAIFETNVLGAFLVA CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH REAARRLSTARGGAGGALVNVSSAAARLGSPHEYVDYAASKGAVDTMTLGLARELGREGV HHHHHHHHHHCCCCCCEEEECHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCE RVNAVRPGLIDTEIHACGGQPDRAQRLGAATPMGRPGTAAEVAETIVWLLSDAASYVTGA EEEEECCCCCCCHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LLDCSGGR EEECCCCC >Mature Secondary Structure SKTIVITGGSRGIGRATAVLCARRGWSVAIQYRGNRQAADETAGLVEQAGGRLLAVQGD CCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECC VSSEADVMALFEAAQDRFGALHGVVNNAGIVAPAQDVADMSAQRLRAIFETNVLGAFLVA CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH REAARRLSTARGGAGGALVNVSSAAARLGSPHEYVDYAASKGAVDTMTLGLARELGREGV HHHHHHHHHHCCCCCCEEEECHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCE RVNAVRPGLIDTEIHACGGQPDRAQRLGAATPMGRPGTAAEVAETIVWLLSDAASYVTGA EEEEECCCCCCCHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LLDCSGGR EEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 7764507 [H]