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The map label for this gene is sodC [H]

Identifier: 17547087

GI number: 17547087

Start: 2572296

End: 2572844

Strand: Reverse

Name: sodC [H]

Synonym: RSc2368

Alternate gene names: 17547087

Gene position: 2572844-2572296 (Counterclockwise)

Preceding gene: 17547088

Following gene: 17547086

Centisome position: 69.23

GC content: 70.13

Gene sequence:

>549_bases
ATGAAGCAACTCGTGATCGGACTTGCCGCGATCGGCCTGATGGCCGGCTGCGCTTCGAATGCCGGCACCGGCGCCAGCAC
CGGCGCACCCGCCGCCGGCACCTCGGCTTTGGCCACGCTGGCGCCCAAGAGCGGCAGCAACGTGCAAGGCACCATCAAGC
TGCTGCAGCAAGGCGACAGCCGGGTTGCGATGGCGGTCGACATTGCCGGCCTGCCGCCCAACGGCATGTTCGGCTTCCAT
GTACACGAGAAGGGCGACTGCTCCTCGCCGGACGGCATGAGCGCGGGCGGCCACTTCAACCCGACCGGCCAGCCGCACGG
CGATCCGCGCTCCGGCCCGCACCATGCCGGCGACATCCCGATGCTGCAGTCCGATGCCAGCGGCAAGGCCGTCGGCTCGA
TCGTCCTGAACGGCGTCACGCTCACGCCCGGCGCCACCAGCCTGGTCGGCCGCGCGGTGATCGTCCATGCGGGCATGGAC
GACTACAAGACCCAGCCGACCGGCAACTCCGGCGGGCGCGTCGCTTGCGGCGTGATCGTGGCGAACTGA

Upstream 100 bases:

>100_bases
CACCCCGGCTCCCAAGGGCTGAGACCGCGCCGATGTTGCGTCTTCATCATCCGGCAGTACAATCGTCCGCTCGCAAGTGA
ACCCTGACTGGAGGTGACAC

Downstream 100 bases:

>100_bases
CGCCCGCACGCGGCGCCCGTTCTGGAATGGATGGGCGCCGGCCGCATGCAGGAATGCGCACGCTGCCGTGCGCATTTTTT
TTGGATACCGCTCCATGCCG

Product: superoxide dismutase Cu-Zn precursor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MKQLVIGLAAIGLMAGCASNAGTGASTGAPAAGTSALATLAPKSGSNVQGTIKLLQQGDSRVAMAVDIAGLPPNGMFGFH
VHEKGDCSSPDGMSAGGHFNPTGQPHGDPRSGPHHAGDIPMLQSDASGKAVGSIVLNGVTLTPGATSLVGRAVIVHAGMD
DYKTQPTGNSGGRVACGVIVAN

Sequences:

>Translated_182_residues
MKQLVIGLAAIGLMAGCASNAGTGASTGAPAAGTSALATLAPKSGSNVQGTIKLLQQGDSRVAMAVDIAGLPPNGMFGFH
VHEKGDCSSPDGMSAGGHFNPTGQPHGDPRSGPHHAGDIPMLQSDASGKAVGSIVLNGVTLTPGATSLVGRAVIVHAGMD
DYKTQPTGNSGGRVACGVIVAN
>Mature_182_residues
MKQLVIGLAAIGLMAGCASNAGTGASTGAPAAGTSALATLAPKSGSNVQGTIKLLQQGDSRVAMAVDIAGLPPNGMFGFH
VHEKGDCSSPDGMSAGGHFNPTGQPHGDPRSGPHHAGDIPMLQSDASGKAVGSIVLNGVTLTPGATSLVGRAVIVHAGMD
DYKTQPTGNSGGRVACGVIVAN

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4826665, Length=138, Percent_Identity=36.231884057971, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI4507149, Length=139, Percent_Identity=38.8489208633094, Blast_Score=80, Evalue=1e-15,
Organism=Escherichia coli, GI1787934, Length=166, Percent_Identity=33.1325301204819, Blast_Score=65, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71981876, Length=150, Percent_Identity=41.3333333333333, Blast_Score=95, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71981879, Length=150, Percent_Identity=41.3333333333333, Blast_Score=95, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17554806, Length=140, Percent_Identity=37.8571428571429, Blast_Score=83, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17537871, Length=151, Percent_Identity=37.7483443708609, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322564, Length=151, Percent_Identity=41.0596026490066, Blast_Score=95, Evalue=8e-21,
Organism=Drosophila melanogaster, GI116007680, Length=186, Percent_Identity=32.258064516129, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI85725006, Length=186, Percent_Identity=32.258064516129, Blast_Score=86, Evalue=9e-18,
Organism=Drosophila melanogaster, GI45551081, Length=186, Percent_Identity=32.258064516129, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24652737, Length=186, Percent_Identity=32.258064516129, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI17136496, Length=140, Percent_Identity=37.1428571428571, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI281363087, Length=113, Percent_Identity=37.1681415929204, Blast_Score=70, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24652342, Length=113, Percent_Identity=37.1681415929204, Blast_Score=70, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17774; Mature: 17774

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLVIGLAAIGLMAGCASNAGTGASTGAPAAGTSALATLAPKSGSNVQGTIKLLQQGDS
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHEECCCCC
RVAMAVDIAGLPPNGMFGFHVHEKGDCSSPDGMSAGGHFNPTGQPHGDPRSGPHHAGDIP
EEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MLQSDASGKAVGSIVLNGVTLTPGATSLVGRAVIVHAGMDDYKTQPTGNSGGRVACGVIV
EEECCCCCCEEEEEEEECEEECCCCHHHHCEEEEEECCCCCCCCCCCCCCCCEEEEEEEE
AN
EC
>Mature Secondary Structure
MKQLVIGLAAIGLMAGCASNAGTGASTGAPAAGTSALATLAPKSGSNVQGTIKLLQQGDS
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHEECCCCC
RVAMAVDIAGLPPNGMFGFHVHEKGDCSSPDGMSAGGHFNPTGQPHGDPRSGPHHAGDIP
EEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MLQSDASGKAVGSIVLNGVTLTPGATSLVGRAVIVHAGMDDYKTQPTGNSGGRVACGVIV
EEECCCCCCEEEEEEEECEEECCCCHHHHCEEEEEECCCCCCCCCCCCCCCCEEEEEEEE
AN
EC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]