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The map label for this gene is 17547081

Identifier: 17547081

GI number: 17547081

Start: 2565244

End: 2565963

Strand: Direct

Name: 17547081

Synonym: RSc2362

Alternate gene names: NA

Gene position: 2565244-2565963 (Clockwise)

Preceding gene: 17547080

Following gene: 17547082

Centisome position: 69.02

GC content: 75.28

Gene sequence:

>720_bases
ATGGACCCGCGACGCCAACCCGACCTGATCGACCGGCTCGCCGCCGAATACGCGGTCGGCACGCTGCGCGCGGGCGCCCG
CCGGCGCTTCGAGCAGCTGATCCGCCACGATGCCGACGTGCGCACGACGGTCGAGCGCTGGCAGCGCTACCTGGCCGATC
TGCCCGCGCTGCAGCCCGCCTCCGCGCCGCTGCCTGAGATTCTCTGCCGCGTCGAGGTGCAGCTCGGCTGGCGCCGGCCG
GAACCGCGGCGGCGCACGCGCTGGCAGCAGCTCTGGCACGGGACCGGCTTCTGGCGCGTGGCTGTGGCGGCGACGGCCAT
CGTGGCCGTGGTGGCGATCGGCCTGAACCTGCGGCTGGCGCGGCAACTGCGCGAAGCCCCCGTCGCCAGCGCGGTGGCCG
TGCTGCAGGACGCACAGGCCCAGGCCGCCGTGCTGGTCACCTGGGACGCGCGCACCGGCACGCTGTCGCTCAAGCGGCTC
GACGCCACGCCGCTGACCAGCCAGCAGGCGCTGCAATTGTGGGCGCTGCCGCCCGACGGGCACCCGCGATCGCTTGGCGT
GATCGGGCACCAGCGCGCGATGCGGCTGATGCCCGCCCAGCCGCTGGCGCGAGTGCCGGCGCTCGCGGTGAGCGTGGAGC
CGCGCGGCGGCTCGCCCGACCCGAACGGGCCAACCGGGCCGGTGATCTTCAAGGGCGCGCTGATCGACAGCGCGCTGTAG

Upstream 100 bases:

>100_bases
ACAGCGAACTGGCGCAGGTGCTATCCGTGCCGCTGGGCACGGTGAAATCGTGGATGCGGCGCGGCCTGGACCGCCTGCGC
GAATGCCTGGGGACGCCTTG

Downstream 100 bases:

>100_bases
CCGGGCCGTGGAGCGCCGGGCTGGCCATGGGCCGGCGGACGATATAATCGCGGTTTCCTGAATCCGCGGCCGGCCCATCC
CGCCCGGCTGCCCTCCTCCG

Product: hypothetical protein

Products: NA

Alternate protein names: RNA Polymerase Sigma-70 Family Protein

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MDPRRQPDLIDRLAAEYAVGTLRAGARRRFEQLIRHDADVRTTVERWQRYLADLPALQPASAPLPEILCRVEVQLGWRRP
EPRRRTRWQQLWHGTGFWRVAVAATAIVAVVAIGLNLRLARQLREAPVASAVAVLQDAQAQAAVLVTWDARTGTLSLKRL
DATPLTSQQALQLWALPPDGHPRSLGVIGHQRAMRLMPAQPLARVPALAVSVEPRGGSPDPNGPTGPVIFKGALIDSAL

Sequences:

>Translated_239_residues
MDPRRQPDLIDRLAAEYAVGTLRAGARRRFEQLIRHDADVRTTVERWQRYLADLPALQPASAPLPEILCRVEVQLGWRRP
EPRRRTRWQQLWHGTGFWRVAVAATAIVAVVAIGLNLRLARQLREAPVASAVAVLQDAQAQAAVLVTWDARTGTLSLKRL
DATPLTSQQALQLWALPPDGHPRSLGVIGHQRAMRLMPAQPLARVPALAVSVEPRGGSPDPNGPTGPVIFKGALIDSAL
>Mature_239_residues
MDPRRQPDLIDRLAAEYAVGTLRAGARRRFEQLIRHDADVRTTVERWQRYLADLPALQPASAPLPEILCRVEVQLGWRRP
EPRRRTRWQQLWHGTGFWRVAVAATAIVAVVAIGLNLRLARQLREAPVASAVAVLQDAQAQAAVLVTWDARTGTLSLKRL
DATPLTSQQALQLWALPPDGHPRSLGVIGHQRAMRLMPAQPLARVPALAVSVEPRGGSPDPNGPTGPVIFKGALIDSAL

Specific function: Unknown

COG id: COG5343

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26260; Mature: 26260

Theoretical pI: Translated: 11.84; Mature: 11.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPRRQPDLIDRLAAEYAVGTLRAGARRRFEQLIRHDADVRTTVERWQRYLADLPALQPA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
SAPLPEILCRVEVQLGWRRPEPRRRTRWQQLWHGTGFWRVAVAATAIVAVVAIGLNLRLA
CCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHH
RQLREAPVASAVAVLQDAQAQAAVLVTWDARTGTLSLKRLDATPLTSQQALQLWALPPDG
HHHHHCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHHEEEEECCCCC
HPRSLGVIGHQRAMRLMPAQPLARVPALAVSVEPRGGSPDPNGPTGPVIFKGALIDSAL
CCCCCCHHHHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCCCCCCCCEEEECHHHCCCC
>Mature Secondary Structure
MDPRRQPDLIDRLAAEYAVGTLRAGARRRFEQLIRHDADVRTTVERWQRYLADLPALQPA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
SAPLPEILCRVEVQLGWRRPEPRRRTRWQQLWHGTGFWRVAVAATAIVAVVAIGLNLRLA
CCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHH
RQLREAPVASAVAVLQDAQAQAAVLVTWDARTGTLSLKRLDATPLTSQQALQLWALPPDG
HHHHHCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHHEEEEECCCCC
HPRSLGVIGHQRAMRLMPAQPLARVPALAVSVEPRGGSPDPNGPTGPVIFKGALIDSAL
CCCCCCHHHHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCCCCCCCCEEEECHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA