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The map label for this gene is yhjC [C]

Identifier: 17547046

GI number: 17547046

Start: 2527457

End: 2528356

Strand: Reverse

Name: yhjC [C]

Synonym: RSc2327

Alternate gene names: 17547046

Gene position: 2528356-2527457 (Counterclockwise)

Preceding gene: 17547049

Following gene: 17547045

Centisome position: 68.03

GC content: 59.11

Gene sequence:

>900_bases
ATGGACAGACTCGCCGCCATGCAGATCTTCGTCAGAACCGTAGAGCTGGGCTCAATGTCCGCAGCGGCGGTCGAACTCGA
TCTGTCCTCCCAGTTGGCGGGCAGGCAAGTTCGCGCGTTGGAGGGCACCCTCGGCGTCAAGCTGCTGAACCGCACCACGC
GACGGCAAAGCCTCACCGATGGTGGGCGGCTGTTCTACGAACGTGCTAAGAACATCTTGGCCGAGTTGGAGGCCGCTCAG
GCGCAGATTGACGAGTCACGCGCGCTTCCAAGGGGGCGTCTGCGTATCAGCGCGCCCATTACCTTCGGTAGCAAGGCGCT
GGCTCCGCGATTGGCAGAATTCATGAATCAGTTCCCAGACATCACCGTGGAGCTCAGCCTGACGAATCGGACGGTAGACC
TCGTGGAAGAGGCCTTCGATGCCGCCTTTCGAACCGGTGATCTACCGGACAGCGGATTGATGGCCAGACGCCTGGCGCCT
CATCGCTTGATGCTATGTGCCTCTCCCGGCTATCTGAAGATGCGAGGTCATCCGCGTACGCCGGAAGATCTTCGCAAGCA
CGAGTGCCTGGTATTCGCCCACACTTCGCTGAGAACCCAGTGGTCGTTTGAGGGTCCCGATGGATCGGTGAAAATTCCGA
TCAAGGGCAAGTTCTTAGCTGACAGCGGGGAGGCCCTTCGTGCAGCTGCGGTGGCCGGCGTGGGCATCATCCTCCAACCG
GCTGAACTACTCGCCGAGGATATCCAAACAGGTCTACTAACGAGAATTCTCAAAAGGTATGAGCCAACACCTAGGTCGCT
GCATGTGCTGTATGCGCCCGATCGTCGGATGACACAAAAGCTGCGCGCGTTTTTGGACTTCGTTTCGCACGCGTTCGGCG
ATAGCAATGTCACGCGATAG

Upstream 100 bases:

>100_bases
AGAAGTTGCTGGGATATCGATCGATACCCGCCACTGTAGATATGAACAAAGGGTGATTAAATAGATCCTATGTTCCATCA
CTTGAACCGGAGCGTTTCAA

Downstream 100 bases:

>100_bases
AGTGGACCGTCTTGATCGCCAAGGTTGGTTTCAGTTGCCGTTGACGTGCGTTTCGTCAGGTTTGTCCAGCCCTGTGAAAA
ACTCCGAAGGCTGCATACCT

Product: transcription regulator protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDRLAAMQIFVRTVELGSMSAAAVELDLSSQLAGRQVRALEGTLGVKLLNRTTRRQSLTDGGRLFYERAKNILAELEAAQ
AQIDESRALPRGRLRISAPITFGSKALAPRLAEFMNQFPDITVELSLTNRTVDLVEEAFDAAFRTGDLPDSGLMARRLAP
HRLMLCASPGYLKMRGHPRTPEDLRKHECLVFAHTSLRTQWSFEGPDGSVKIPIKGKFLADSGEALRAAAVAGVGIILQP
AELLAEDIQTGLLTRILKRYEPTPRSLHVLYAPDRRMTQKLRAFLDFVSHAFGDSNVTR

Sequences:

>Translated_299_residues
MDRLAAMQIFVRTVELGSMSAAAVELDLSSQLAGRQVRALEGTLGVKLLNRTTRRQSLTDGGRLFYERAKNILAELEAAQ
AQIDESRALPRGRLRISAPITFGSKALAPRLAEFMNQFPDITVELSLTNRTVDLVEEAFDAAFRTGDLPDSGLMARRLAP
HRLMLCASPGYLKMRGHPRTPEDLRKHECLVFAHTSLRTQWSFEGPDGSVKIPIKGKFLADSGEALRAAAVAGVGIILQP
AELLAEDIQTGLLTRILKRYEPTPRSLHVLYAPDRRMTQKLRAFLDFVSHAFGDSNVTR
>Mature_299_residues
MDRLAAMQIFVRTVELGSMSAAAVELDLSSQLAGRQVRALEGTLGVKLLNRTTRRQSLTDGGRLFYERAKNILAELEAAQ
AQIDESRALPRGRLRISAPITFGSKALAPRLAEFMNQFPDITVELSLTNRTVDLVEEAFDAAFRTGDLPDSGLMARRLAP
HRLMLCASPGYLKMRGHPRTPEDLRKHECLVFAHTSLRTQWSFEGPDGSVKIPIKGKFLADSGEALRAAAVAGVGIILQP
AELLAEDIQTGLLTRILKRYEPTPRSLHVLYAPDRRMTQKLRAFLDFVSHAFGDSNVTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=35.0515463917526, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1786401, Length=285, Percent_Identity=35.4385964912281, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=32.5423728813559, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1787128, Length=274, Percent_Identity=33.5766423357664, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=30.4195804195804, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=29.7945205479452, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787589, Length=278, Percent_Identity=26.978417266187, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1789173, Length=253, Percent_Identity=28.8537549407115, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI157672245, Length=119, Percent_Identity=36.9747899159664, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788481, Length=304, Percent_Identity=26.9736842105263, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786448, Length=242, Percent_Identity=29.3388429752066, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788297, Length=171, Percent_Identity=30.4093567251462, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788706, Length=255, Percent_Identity=23.5294117647059, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33076; Mature: 33076

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLAAMQIFVRTVELGSMSAAAVELDLSSQLAGRQVRALEGTLGVKLLNRTTRRQSLTD
CCHHHHHHHHHHHHHCCCCCEEEEEEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
GGRLFYERAKNILAELEAAQAQIDESRALPRGRLRISAPITFGSKALAPRLAEFMNQFPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
ITVELSLTNRTVDLVEEAFDAAFRTGDLPDSGLMARRLAPHRLMLCASPGYLKMRGHPRT
EEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEEEECCCEEEECCCCCC
PEDLRKHECLVFAHTSLRTQWSFEGPDGSVKIPIKGKFLADSGEALRAAAVAGVGIILQP
HHHHHHCCEEEEEECCCCEEEEEECCCCCEEEEEECEEECCCCHHHHHHHHHCCCEEECC
AELLAEDIQTGLLTRILKRYEPTPRSLHVLYAPDRRMTQKLRAFLDFVSHAFGDSNVTR
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDRLAAMQIFVRTVELGSMSAAAVELDLSSQLAGRQVRALEGTLGVKLLNRTTRRQSLTD
CCHHHHHHHHHHHHHCCCCCEEEEEEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
GGRLFYERAKNILAELEAAQAQIDESRALPRGRLRISAPITFGSKALAPRLAEFMNQFPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
ITVELSLTNRTVDLVEEAFDAAFRTGDLPDSGLMARRLAPHRLMLCASPGYLKMRGHPRT
EEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEEEECCCEEEECCCCCC
PEDLRKHECLVFAHTSLRTQWSFEGPDGSVKIPIKGKFLADSGEALRAAAVAGVGIILQP
HHHHHHCCEEEEEECCCCEEEEEECCCCCEEEEEECEEECCCCHHHHHHHHHCCCEEECC
AELLAEDIQTGLLTRILKRYEPTPRSLHVLYAPDRRMTQKLRAFLDFVSHAFGDSNVTR
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]