| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
Click here to switch to the map view.
The map label for this gene is 17547026
Identifier: 17547026
GI number: 17547026
Start: 2506910
End: 2507869
Strand: Reverse
Name: 17547026
Synonym: RSc2307
Alternate gene names: NA
Gene position: 2507869-2506910 (Counterclockwise)
Preceding gene: 17547027
Following gene: 17547025
Centisome position: 67.48
GC content: 71.04
Gene sequence:
>960_bases GTGTCACGCTTGTCGACTGAGGCCTTGGCGATCGGACTCGGTGCCAGCGCGCTGGCGCTGGGCCGGCGTCGAAGCGTGCT GTCGCGGTTGCACGCGGCGTTTGGCGCGTGGGGCGCGCTGCGTTCGGGGCGATCCGCGGACGCCCCGGCGGACACGCCCG CGGACACCACAGCCGCATCCGCGTCCGACGATGTCGATGCCCCCGACCTGATGGTGGAGATCGATGCGGCGCTGCGCTAC ACGGAACAGGGTGCGCTGGACGCGCTGCGCCGCGCGCTGACGGGCGACACGCCGGCGACGGCCGGGCCGGCAGGCGCCGG CGCCCGCGCAACGCGGCGCGCGGCGATCGTGCTGGACGATTTCTGGGGGCAGCACGCGATTCTGCGCGGCGATTTCCGCT CGATGTCCGCGCACGACCTCGATGAGGTTGCGTGTGCGTACGTTGCCGACGTGTTCGGCGCCGAGACGTCCACCGTGTCG ACGCGCTGGCAGTTGCGCGGCGACGGGCGCGCGCTTTTTGCAAGCGCGCTGTCACGTTCGCTGCTGGATGGCATTGGCGA GGTCTGCGCCGCCACCCGGGTCGAGGTCGGGAGCATCACGCTGGGGCTGCCGCAGCGGCTGAACCGCGTGCGCCGGGCAT TGGCGGGGCGCGATGGGTTGCTGCTGGTCGTCGATGAAACGATGCTGCACGCCGTGACGCTCGATGGCGGCCGCTGGCTC GCCTACGACGCGCAGCGTGTCTTTGCCGATGCGGGCGGCGTTGCGGCGCCGATCGCCGAGGTTGCCCGCCATGTCTTTGA GCGGTCCCTGGTGCGGCAGCATGATGACTGCGAGGTCTATCTCTGCGGGCTGGCCGTCGACCCCCGGCAGTTCGACCCGT GCTTCGAGCGTGTCCATCCGCTGACGGGCCACATCAGCGGCCACGCTCCCGCACGATGCCTGATGAGGTTCGCGCAATGA
Upstream 100 bases:
>100_bases CAGATCAAGCAGGCGGCGATGCGCAGCGGCATGACGACGCTGCGCACCGCGGCGGTCAAGCTGGTTGCCGCGGGCGAAAC CACGCTTGAGGAGATCAACC
Downstream 100 bases:
>100_bases TGTCGCCTCTCAACATCGACTTCGCGCGGCGCCGGACCGGCCCGACCACGGCCGGGGTTGCGCTGGTGATCGCAGCCGCC TTGCTGCTGCTGTTCGCGGG
Product: signal peptide protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MSRLSTEALAIGLGASALALGRRRSVLSRLHAAFGAWGALRSGRSADAPADTPADTTAASASDDVDAPDLMVEIDAALRY TEQGALDALRRALTGDTPATAGPAGAGARATRRAAIVLDDFWGQHAILRGDFRSMSAHDLDEVACAYVADVFGAETSTVS TRWQLRGDGRALFASALSRSLLDGIGEVCAATRVEVGSITLGLPQRLNRVRRALAGRDGLLLVVDETMLHAVTLDGGRWL AYDAQRVFADAGGVAAPIAEVARHVFERSLVRQHDDCEVYLCGLAVDPRQFDPCFERVHPLTGHISGHAPARCLMRFAQ
Sequences:
>Translated_319_residues MSRLSTEALAIGLGASALALGRRRSVLSRLHAAFGAWGALRSGRSADAPADTPADTTAASASDDVDAPDLMVEIDAALRY TEQGALDALRRALTGDTPATAGPAGAGARATRRAAIVLDDFWGQHAILRGDFRSMSAHDLDEVACAYVADVFGAETSTVS TRWQLRGDGRALFASALSRSLLDGIGEVCAATRVEVGSITLGLPQRLNRVRRALAGRDGLLLVVDETMLHAVTLDGGRWL AYDAQRVFADAGGVAAPIAEVARHVFERSLVRQHDDCEVYLCGLAVDPRQFDPCFERVHPLTGHISGHAPARCLMRFAQ >Mature_318_residues SRLSTEALAIGLGASALALGRRRSVLSRLHAAFGAWGALRSGRSADAPADTPADTTAASASDDVDAPDLMVEIDAALRYT EQGALDALRRALTGDTPATAGPAGAGARATRRAAIVLDDFWGQHAILRGDFRSMSAHDLDEVACAYVADVFGAETSTVST RWQLRGDGRALFASALSRSLLDGIGEVCAATRVEVGSITLGLPQRLNRVRRALAGRDGLLLVVDETMLHAVTLDGGRWLA YDAQRVFADAGGVAAPIAEVARHVFERSLVRQHDDCEVYLCGLAVDPRQFDPCFERVHPLTGHISGHAPARCLMRFAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33839; Mature: 33707
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLSTEALAIGLGASALALGRRRSVLSRLHAAFGAWGALRSGRSADAPADTPADTTAAS CCCCCCHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC ASDDVDAPDLMVEIDAALRYTEQGALDALRRALTGDTPATAGPAGAGARATRRAAIVLDD CCCCCCCCHHEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHEEEEEEC FWGQHAILRGDFRSMSAHDLDEVACAYVADVFGAETSTVSTRWQLRGDGRALFASALSRS CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHH LLDGIGEVCAATRVEVGSITLGLPQRLNRVRRALAGRDGLLLVVDETMLHAVTLDGGRWL HHHHHHHHHHHHHEEECEEEECCHHHHHHHHHHHCCCCCEEEEEECCEEEEEEECCCEEE AYDAQRVFADAGGVAAPIAEVARHVFERSLVRQHDDCEVYLCGLAVDPRQFDPCFERVHP EEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHCCHHHHHCCC LTGHISGHAPARCLMRFAQ CCCCCCCCCHHHHHHHHCC >Mature Secondary Structure SRLSTEALAIGLGASALALGRRRSVLSRLHAAFGAWGALRSGRSADAPADTPADTTAAS CCCCCHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC ASDDVDAPDLMVEIDAALRYTEQGALDALRRALTGDTPATAGPAGAGARATRRAAIVLDD CCCCCCCCHHEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHEEEEEEC FWGQHAILRGDFRSMSAHDLDEVACAYVADVFGAETSTVSTRWQLRGDGRALFASALSRS CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHH LLDGIGEVCAATRVEVGSITLGLPQRLNRVRRALAGRDGLLLVVDETMLHAVTLDGGRWL HHHHHHHHHHHHHEEECEEEECCHHHHHHHHHHHCCCCCEEEEEECCEEEEEEECCCEEE AYDAQRVFADAGGVAAPIAEVARHVFERSLVRQHDDCEVYLCGLAVDPRQFDPCFERVHP EEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHCCHHHHHCCC LTGHISGHAPARCLMRFAQ CCCCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA