Click here to switch to the map view.

The map label for this gene is 17546800

Identifier: 17546800

GI number: 17546800

Start: 2253893

End: 2254423

Strand: Direct

Name: 17546800

Synonym: RSc2081

Alternate gene names: NA

Gene position: 2253893-2254423 (Clockwise)

Preceding gene: 17546799

Following gene: 17546801

Centisome position: 60.65

GC content: 72.13

Gene sequence:

>531_bases
ATGGCCGCCACCTCTCCTGCTTCCCCCGCCGCCTCCGGCGGTGCGATCGATGCATCGACCGCACCGCCCCTGCGCCGGCG
CCTTGCCGCGATGCTCTATGAAGGCCTGCTGCTGTTCGGCGTGCTGTTCGGCGCCACGGCCCTCTTCCTGGTCCTGCGCG
CGATCGTGCCGCCGCTGGCGCGCACGGGCGACGTGGGGCTGCAGGTCTGGGGCTTCCTTGCGCTCGGGCTGTATTTCGTC
GGGTTCTGGCGCAAGCGCGGGCAGACGCTGGCGATGCAGACGTGGCGCATCCGCCTGGTGAGTGCGGACGGCGCGCCGGT
ATCGCTCGGGCAAGCCATTGCGCGCTACCTGCTGGCGTGGATCTGGGTGGCCGTGGCGGCCGGTGTCATCCATGTCAGCG
GACTCTCGCGCTGGGCGGGGGCCGGCGTCGCGCTGGCATGCGTGCTGGCGTGGGCCGCGCTGGCCTGGCTCGATCCGCGG
CGCCAGTTCCTGCATGATCGGCTGGCCGGCACGCGGCTGATACGCGACTGA

Upstream 100 bases:

>100_bases
GGCCGGCGGTACGCCCTTTGGCATAATCGGGGCGCGCGCCGCCCTCCCCATTGCCGGCGCATGACGCCGCCGCAGTCCGC
CTGCGGGGCCCTGGATACCG

Downstream 100 bases:

>100_bases
GCGCCGCCACCCGCCAGCGGATTCCGCCATGACCCGCGCCAGCCTGCCAGCCGCTCCTGTGCCCTGGGCCTCGGTGACGG
CGGCGAATGCGCGCCGGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: RDD Domain Containing Protein; RDD Family Protein; Transmembrane Protein; RDD Family; RDD Family Membrane Protein; RDD Domain Protein

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MAATSPASPAASGGAIDASTAPPLRRRLAAMLYEGLLLFGVLFGATALFLVLRAIVPPLARTGDVGLQVWGFLALGLYFV
GFWRKRGQTLAMQTWRIRLVSADGAPVSLGQAIARYLLAWIWVAVAAGVIHVSGLSRWAGAGVALACVLAWAALAWLDPR
RQFLHDRLAGTRLIRD

Sequences:

>Translated_176_residues
MAATSPASPAASGGAIDASTAPPLRRRLAAMLYEGLLLFGVLFGATALFLVLRAIVPPLARTGDVGLQVWGFLALGLYFV
GFWRKRGQTLAMQTWRIRLVSADGAPVSLGQAIARYLLAWIWVAVAAGVIHVSGLSRWAGAGVALACVLAWAALAWLDPR
RQFLHDRLAGTRLIRD
>Mature_175_residues
AATSPASPAASGGAIDASTAPPLRRRLAAMLYEGLLLFGVLFGATALFLVLRAIVPPLARTGDVGLQVWGFLALGLYFVG
FWRKRGQTLAMQTWRIRLVSADGAPVSLGQAIARYLLAWIWVAVAAGVIHVSGLSRWAGAGVALACVLAWAALAWLDPRR
QFLHDRLAGTRLIRD

Specific function: Unknown

COG id: COG1714

COG function: function code S; Predicted membrane protein/domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18788; Mature: 18657

Theoretical pI: Translated: 12.04; Mature: 12.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAATSPASPAASGGAIDASTAPPLRRRLAAMLYEGLLLFGVLFGATALFLVLRAIVPPLA
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RTGDVGLQVWGFLALGLYFVGFWRKRGQTLAMQTWRIRLVSADGAPVSLGQAIARYLLAW
CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHEEEEEECCCCCHHHHHHHHHHHHHH
IWVAVAAGVIHVSGLSRWAGAGVALACVLAWAALAWLDPRRQFLHDRLAGTRLIRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AATSPASPAASGGAIDASTAPPLRRRLAAMLYEGLLLFGVLFGATALFLVLRAIVPPLA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RTGDVGLQVWGFLALGLYFVGFWRKRGQTLAMQTWRIRLVSADGAPVSLGQAIARYLLAW
CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHEEEEEECCCCCHHHHHHHHHHHHHH
IWVAVAAGVIHVSGLSRWAGAGVALACVLAWAALAWLDPRRQFLHDRLAGTRLIRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA