BacMap

Definition	Ralstonia solanacearum GMI1000, complete genome.
Accession	NC_003295
Length	3,716,413

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The map label for this gene is ucpA [C]

Identifier: 17546557

GI number: 17546557

Start: 2009846

End: 2010634

Strand: Reverse

Name: ucpA [C]

Synonym: RSc1838

Alternate gene names: 17546557

Gene position: 2010634-2009846 (Counterclockwise)

Preceding gene: 17546558

Following gene: 17546556

Centisome position: 54.1

GC content: 70.72

Gene sequence:

>789_bases
ATGAAAGGTCTTGAAGGCAAGGTGGCCATCGTCACCGGCGGCGCCACCCTGATCGGCGCGGCCGTTGTCCGCACGCTTCG
CAGCTACCGGGTCAAGGTGGCGCTGTTCGATATCGACGCGGCCAGCGGCAACCGCGTCGCAGCCGAGGACTCCGACGGCA
CCCGCTTCTGGCCGGTGGACATCACGGACGACCGGCAACTGGAGCGCGGCGTTGCCGACGCGGCGGCCCACTTCGGGCGG
GTGGATTTCCTGGTGAACCTCGCCGCCACCTATCTCGACGACGGCGCGAAGTCGGGGCGAGAAGACTGGCTCAAGGCGCT
GGACGTCAACCTGGTCAGCGCGGTCATGGCCGCGCGCGCCGTCCACCCGCACCTGGCGGCGGCGGGCGGCGGCGCGATCG
TCAACTTCACCAGCATCTCGTCCAAGGTCGCCCAGACCGGACGCTGGCTCTACCCGGTCTCCAAGGCCGCCCTGGTGCAG
CTGACCCGGGGCATGGCGATGGACTACGCGGCCGACGGCATCCGGGTGAACTCCGTGTCGCCGGGCTGGACCTGGTCGCG
CGTCATGGATGCGCTCACGCACGGCGACCGCGCCAAGACGGACCGCGTGGCCGCCGACTACCACCTGCTGCGGCGCGTGG
GCGATCCCGAGGAGGTCGCGGAGGTCGTCGCGTTCCTGCTCTCCGGGCACGCCGCTTTCGTGACCGGCGCCGACTACGCG
GTCGACGGCGGCTATTCGGCGATGGGGCCGGAGCAGGCCAAGCCGGCCATTGCGCGCCTGGCCGAATAA

Upstream 100 bases:

>100_bases
CGCGCAATCGCGACGACCTCGATGACCGCTCCATCCCGGCCGCCGCCTGGCGGCGGGCGGACCGTTCCGCAGCGATTTTC
GTGAGCAAGGTGAGATTCCT

Downstream 100 bases:

>100_bases
CGCAGACCCGCCCGACCGGGCCCGATCTTTCATCAAGGAGAACTCTCATGCGTCGAATCGCGATTGTGGGCGGTGGCCAG
GCCGGCTTGCCGCTGGCCTT

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MKGLEGKVAIVTGGATLIGAAVVRTLRSYRVKVALFDIDAASGNRVAAEDSDGTRFWPVDITDDRQLERGVADAAAHFGR
VDFLVNLAATYLDDGAKSGREDWLKALDVNLVSAVMAARAVHPHLAAAGGGAIVNFTSISSKVAQTGRWLYPVSKAALVQ
LTRGMAMDYAADGIRVNSVSPGWTWSRVMDALTHGDRAKTDRVAADYHLLRRVGDPEEVAEVVAFLLSGHAAFVTGADYA
VDGGYSAMGPEQAKPAIARLAE

Sequences:

>Translated_262_residues
MKGLEGKVAIVTGGATLIGAAVVRTLRSYRVKVALFDIDAASGNRVAAEDSDGTRFWPVDITDDRQLERGVADAAAHFGR
VDFLVNLAATYLDDGAKSGREDWLKALDVNLVSAVMAARAVHPHLAAAGGGAIVNFTSISSKVAQTGRWLYPVSKAALVQ
LTRGMAMDYAADGIRVNSVSPGWTWSRVMDALTHGDRAKTDRVAADYHLLRRVGDPEEVAEVVAFLLSGHAAFVTGADYA
VDGGYSAMGPEQAKPAIARLAE
>Mature_262_residues
MKGLEGKVAIVTGGATLIGAAVVRTLRSYRVKVALFDIDAASGNRVAAEDSDGTRFWPVDITDDRQLERGVADAAAHFGR
VDFLVNLAATYLDDGAKSGREDWLKALDVNLVSAVMAARAVHPHLAAAGGGAIVNFTSISSKVAQTGRWLYPVSKAALVQ
LTRGMAMDYAADGIRVNSVSPGWTWSRVMDALTHGDRAKTDRVAADYHLLRRVGDPEEVAEVVAFLLSGHAAFVTGADYA
VDGGYSAMGPEQAKPAIARLAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI19923817, Length=260, Percent_Identity=30, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=29.6875, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI40254992, Length=250, Percent_Identity=32, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=32.8063241106719, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI5031737, Length=253, Percent_Identity=32.8063241106719, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=29.4117647058824, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=30.9803921568627, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI59889578, Length=226, Percent_Identity=27.8761061946903, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI31542939, Length=199, Percent_Identity=29.1457286432161, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI83715985, Length=256, Percent_Identity=28.125, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI126723750, Length=188, Percent_Identity=31.9148936170213, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=29.9595141700405, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=27.6, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI224922801, Length=171, Percent_Identity=30.9941520467836, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=32.2404371584699, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=29.8449612403101, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787905, Length=244, Percent_Identity=31.1475409836066, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=31.5789473684211, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=28.5140562248996, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=30.7692307692308, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=28.3400809716599, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789208, Length=255, Percent_Identity=29.8039215686275, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1786812, Length=196, Percent_Identity=31.6326530612245, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=26.4, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788459, Length=180, Percent_Identity=31.6666666666667, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI2367365, Length=253, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=30, Blast_Score=65, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=260, Percent_Identity=32.6923076923077, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17560332, Length=259, Percent_Identity=33.2046332046332, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI71994600, Length=261, Percent_Identity=31.0344827586207, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=265, Percent_Identity=30.188679245283, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI25147288, Length=257, Percent_Identity=28.7937743190661, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=30.5343511450382, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=256, Percent_Identity=30.46875, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=206, Percent_Identity=33.495145631068, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17561402, Length=260, Percent_Identity=29.6153846153846, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=28.125, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17555706, Length=244, Percent_Identity=27.8688524590164, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17565030, Length=275, Percent_Identity=30.9090909090909, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=276, Percent_Identity=29.7101449275362, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17559104, Length=258, Percent_Identity=30.6201550387597, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=28.5171102661597, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=259, Percent_Identity=29.7297297297297, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17563726, Length=205, Percent_Identity=29.2682926829268, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=271, Percent_Identity=29.1512915129151, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=271, Percent_Identity=30.2583025830258, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=271, Percent_Identity=30.2583025830258, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=28.7878787878788, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=30.6513409961686, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=28.030303030303, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=266, Percent_Identity=28.9473684210526, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=278, Percent_Identity=29.136690647482, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=261, Percent_Identity=29.5019157088123, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=270, Percent_Identity=27.037037037037, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=187, Percent_Identity=25.668449197861, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=255, Percent_Identity=27.843137254902, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI23397609, Length=257, Percent_Identity=36.9649805447471, Blast_Score=117, Evalue=6e-27,
Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=32.421875, Blast_Score=109, Evalue=2e-24,
Organism=Drosophila melanogaster, GI17737361, Length=253, Percent_Identity=29.6442687747036, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI28571526, Length=262, Percent_Identity=31.6793893129771, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=31.7647058823529, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI21357041, Length=258, Percent_Identity=32.5581395348837, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=30.4878048780488, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24644337, Length=122, Percent_Identity=38.5245901639344, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24643142, Length=244, Percent_Identity=29.5081967213115, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI221331218, Length=262, Percent_Identity=26.3358778625954, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24665243, Length=265, Percent_Identity=26.4150943396226, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27696; Mature: 27696

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGLEGKVAIVTGGATLIGAAVVRTLRSYRVKVALFDIDAASGNRVAAEDSDGTRFWPVD
CCCCCCCEEEEECCHHHHHHHHHHHHHHHEEEEEEEEEECCCCCEEEECCCCCCEEEEEC
ITDDRQLERGVADAAAHFGRVDFLVNLAATYLDDGAKSGREDWLKALDVNLVSAVMAARA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
VHPHLAAAGGGAIVNFTSISSKVAQTGRWLYPVSKAALVQLTRGMAMDYAADGIRVNSVS
HCCHHHCCCCCEEEEEHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEECCC
PGWTWSRVMDALTHGDRAKTDRVAADYHLLRRVGDPEEVAEVVAFLLSGHAAFVTGADYA
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCEE
VDGGYSAMGPEQAKPAIARLAE
ECCCCCCCCCHHCCHHHHHHCC
>Mature Secondary Structure
MKGLEGKVAIVTGGATLIGAAVVRTLRSYRVKVALFDIDAASGNRVAAEDSDGTRFWPVD
CCCCCCCEEEEECCHHHHHHHHHHHHHHHEEEEEEEEEECCCCCEEEECCCCCCEEEEEC
ITDDRQLERGVADAAAHFGRVDFLVNLAATYLDDGAKSGREDWLKALDVNLVSAVMAARA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
VHPHLAAAGGGAIVNFTSISSKVAQTGRWLYPVSKAALVQLTRGMAMDYAADGIRVNSVS
HCCHHHCCCCCEEEEEHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEECCC
PGWTWSRVMDALTHGDRAKTDRVAADYHLLRRVGDPEEVAEVVAFLLSGHAAFVTGADYA
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCEE
VDGGYSAMGPEQAKPAIARLAE
ECCCCCCCCCHHCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9655913; 12597275 [H]