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The map label for this gene is ydiU [C]

Identifier: 17546467

GI number: 17546467

Start: 1868909

End: 1870486

Strand: Reverse

Name: ydiU [C]

Synonym: RSc1748

Alternate gene names: 17546467

Gene position: 1870486-1868909 (Counterclockwise)

Preceding gene: 17546474

Following gene: 17546466

Centisome position: 50.33

GC content: 72.05

Gene sequence:

>1578_bases
ATGCCCACTTCCGCCGCCGTCCAGACTGACGATTCCCTTGCGAGCCCGTTCGACTGGCCGGGCCGCCCGCACGCGGCGCC
CGGCTTCGCCCGCCTCGGCGAGCGCTTCCTGACCCGCCTGCCGCCCGTGCCGATGCCGGCCGCGCCCTACCTGGTGGGCT
TCTCGCCGGAAGCCGCCGCGCCCCTGGGCCTGTCGCGCGCCGGGCTCGACACGCCGGCCGGGCTGGATGTCTTTGTCGGC
AACGCCATCGCCGCCTGGAGCGACCCGCTCGCCACCGTCTATTCGGGCCACCAGTTCGGCGTCTGGGCCGGCCAGCTGGG
AGATGGCCGCGCGCTGCTGCTGGCCGAGCTGCAGACCGCCGACGGCCCCTGCGAAGTGCAGCTCAAGGGCGCCGGCCTCA
CGCCTTACTCCCGCATGGGCGATGGCCGCGCCGTGCTGCGCTCGTCGATCCGCGAGTTCCTGTGCTCGGAGGCCATGGCC
GGGCTGGGCATCCCGACCACGCGCGCGCTGTGCGTGATCGGTGCCGATGCCCCGGTGCGCCGCGAAACCATCGAAACCGC
CGCCGTGGTCACGCGCCTGGCGCCCTCGTTCGTGCGCTTCGGCCACTTCGAGCACTTCGCCGCCAACGAGAAGCTGCCCG
AGCTGCGCGCGCTGGCCGATTTCGTCATCGACCGCTTCTACCCGGCCTGCCGCGCCGAGCCGCAGCCCTACCTGGCCCTG
CTGCGCGAGGTCGGCCGCCGCACCGCCGCGCTGATCGCGCAATGGCAGGCCGTCGGCTTCTGCCACGGCGTGATGAACAC
CGACAACATGTCGATCCTGGGCCTGACGCTGGACTACGGCCCGTTCGGCTTCCTGGACGGCTTCGACGCCAACCACATCT
GCAACCACTCCGATACCGGCGGCCGCTACGCCTACGCCCAGCAGCCGCAGATCGCCTACTGGAACCTGTTCTGCCTGGCG
CAGGCGCTGCTGCCGCTGTGCGGCAGCGACCCCACTGCCTTCACCGACCTGAGCGACGAGGCCCAGGCCCAGCCCGCCAT
CGACGCTGCACAGGAGGCACTGCTGGTCTACCGCGACACCTACGGCGAGGCCTTCTACGCGCGCTACCGCGCCAAGCTGG
GCCTGACGCAGGCGCACGACGGCGACGAGGCCCTGTTCGGCGATCTCTTCAAGCTGCTGCACACCCAGCGCGCGGACTAC
ACCCTGTTCTTCCGCCACCTCGCCGACGTGCGCCGCGACGACACCCCCGCCCAGGCGCAGGCCCGCACCGTGCGCGATGT
CTTCTTCGACCGCGACAGCGCCGACGCCTGGCTGGCCGCCTATCGCCAGCGCCTGCAGACCGAACCCGCGCCGGACGCCG
CGCGCGCCGAGGCCATGCGCCGTGTCAACCCGAAGTACGTGCTGCGCAACCACCTGGCCGAGATCGCCATCCGCCGCGCC
GGCGAGAAGGACTTCTCCGAAGTGGAGAACCTGCGCGCCGTGCTGGCCCGCCCCTTCGACGACCACCCCGGCTTCGAGCA
CTACGCCGGACCGGCGCCGGACTGGGCCGCCTCGCTCGAAGTGAGCTGCTCGTCCTGA

Upstream 100 bases:

>100_bases
CCTACGTAGAACGGGCTCTGCCGCGCCGATGCACGCGCGGTTCCCGCCGATCCGGCACCGTTCTTGCGCGGCTTCCCGTG
CCAATCGATTCCCGTCCGAC

Downstream 100 bases:

>100_bases
GGCCGTGCTCTAATCCCGGCCTGTCAGGATCGCCGCCGCCGCCCGACCAAACCACGTCGGCCGCCCATGCAGCGGCCGGC
GGAACCCGCAAGGAGCCTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 524

Protein sequence:

>525_residues
MPTSAAVQTDDSLASPFDWPGRPHAAPGFARLGERFLTRLPPVPMPAAPYLVGFSPEAAAPLGLSRAGLDTPAGLDVFVG
NAIAAWSDPLATVYSGHQFGVWAGQLGDGRALLLAELQTADGPCEVQLKGAGLTPYSRMGDGRAVLRSSIREFLCSEAMA
GLGIPTTRALCVIGADAPVRRETIETAAVVTRLAPSFVRFGHFEHFAANEKLPELRALADFVIDRFYPACRAEPQPYLAL
LREVGRRTAALIAQWQAVGFCHGVMNTDNMSILGLTLDYGPFGFLDGFDANHICNHSDTGGRYAYAQQPQIAYWNLFCLA
QALLPLCGSDPTAFTDLSDEAQAQPAIDAAQEALLVYRDTYGEAFYARYRAKLGLTQAHDGDEALFGDLFKLLHTQRADY
TLFFRHLADVRRDDTPAQAQARTVRDVFFDRDSADAWLAAYRQRLQTEPAPDAARAEAMRRVNPKYVLRNHLAEIAIRRA
GEKDFSEVENLRAVLARPFDDHPGFEHYAGPAPDWAASLEVSCSS

Sequences:

>Translated_525_residues
MPTSAAVQTDDSLASPFDWPGRPHAAPGFARLGERFLTRLPPVPMPAAPYLVGFSPEAAAPLGLSRAGLDTPAGLDVFVG
NAIAAWSDPLATVYSGHQFGVWAGQLGDGRALLLAELQTADGPCEVQLKGAGLTPYSRMGDGRAVLRSSIREFLCSEAMA
GLGIPTTRALCVIGADAPVRRETIETAAVVTRLAPSFVRFGHFEHFAANEKLPELRALADFVIDRFYPACRAEPQPYLAL
LREVGRRTAALIAQWQAVGFCHGVMNTDNMSILGLTLDYGPFGFLDGFDANHICNHSDTGGRYAYAQQPQIAYWNLFCLA
QALLPLCGSDPTAFTDLSDEAQAQPAIDAAQEALLVYRDTYGEAFYARYRAKLGLTQAHDGDEALFGDLFKLLHTQRADY
TLFFRHLADVRRDDTPAQAQARTVRDVFFDRDSADAWLAAYRQRLQTEPAPDAARAEAMRRVNPKYVLRNHLAEIAIRRA
GEKDFSEVENLRAVLARPFDDHPGFEHYAGPAPDWAASLEVSCSS
>Mature_524_residues
PTSAAVQTDDSLASPFDWPGRPHAAPGFARLGERFLTRLPPVPMPAAPYLVGFSPEAAAPLGLSRAGLDTPAGLDVFVGN
AIAAWSDPLATVYSGHQFGVWAGQLGDGRALLLAELQTADGPCEVQLKGAGLTPYSRMGDGRAVLRSSIREFLCSEAMAG
LGIPTTRALCVIGADAPVRRETIETAAVVTRLAPSFVRFGHFEHFAANEKLPELRALADFVIDRFYPACRAEPQPYLALL
REVGRRTAALIAQWQAVGFCHGVMNTDNMSILGLTLDYGPFGFLDGFDANHICNHSDTGGRYAYAQQPQIAYWNLFCLAQ
ALLPLCGSDPTAFTDLSDEAQAQPAIDAAQEALLVYRDTYGEAFYARYRAKLGLTQAHDGDEALFGDLFKLLHTQRADYT
LFFRHLADVRRDDTPAQAQARTVRDVFFDRDSADAWLAAYRQRLQTEPAPDAARAEAMRRVNPKYVLRNHLAEIAIRRAG
EKDFSEVENLRAVLARPFDDHPGFEHYAGPAPDWAASLEVSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=402, Percent_Identity=44.0298507462687, Blast_Score=286, Evalue=3e-77,
Organism=Escherichia coli, GI1787999, Length=489, Percent_Identity=48.6707566462168, Blast_Score=420, Evalue=1e-118,
Organism=Saccharomyces cerevisiae, GI6325034, Length=435, Percent_Identity=33.5632183908046, Blast_Score=213, Evalue=6e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1748_RALSO (Q8XYL0)

Other databases:

- EMBL:   AL646052
- RefSeq:   NP_519869.1
- GeneID:   1220586
- GenomeReviews:   AL646052_GR
- KEGG:   rso:RSc1748
- NMPDR:   fig|267608.1.peg.1748
- HOGENOM:   HBG683993
- OMA:   THIRFGH
- ProtClustDB:   PRK00029
- BioCyc:   RSOL267608:RSC1748-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 57304; Mature: 57173

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTSAAVQTDDSLASPFDWPGRPHAAPGFARLGERFLTRLPPVPMPAAPYLVGFSPEAAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC
PLGLSRAGLDTPAGLDVFVGNAIAAWSDPLATVYSGHQFGVWAGQLGDGRALLLAELQTA
CCCCCCCCCCCCCCCCEEECCCHHHCCCCHHHHHCCCEECEEECCCCCCCEEEEEEHHCC
DGPCEVQLKGAGLTPYSRMGDGRAVLRSSIREFLCSEAMAGLGIPTTRALCVIGADAPVR
CCCEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHH
RETIETAAVVTRLAPSFVRFGHFEHFAANEKLPELRALADFVIDRFYPACRAEPQPYLAL
HHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCHHHCCCCCHHHHH
LREVGRRTAALIAQWQAVGFCHGVMNTDNMSILGLTLDYGPFGFLDGFDANHICNHSDTG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
GRYAYAQQPQIAYWNLFCLAQALLPLCGSDPTAFTDLSDEAQAQPAIDAAQEALLVYRDT
CEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
YGEAFYARYRAKLGLTQAHDGDEALFGDLFKLLHTQRADYTLFFRHLADVRRDDTPAQAQ
CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHH
ARTVRDVFFDRDSADAWLAAYRQRLQTEPAPDAARAEAMRRVNPKYVLRNHLAEIAIRRA
HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHC
GEKDFSEVENLRAVLARPFDDHPGFEHYAGPAPDWAASLEVSCSS
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure 
PTSAAVQTDDSLASPFDWPGRPHAAPGFARLGERFLTRLPPVPMPAAPYLVGFSPEAAA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC
PLGLSRAGLDTPAGLDVFVGNAIAAWSDPLATVYSGHQFGVWAGQLGDGRALLLAELQTA
CCCCCCCCCCCCCCCCEEECCCHHHCCCCHHHHHCCCEECEEECCCCCCCEEEEEEHHCC
DGPCEVQLKGAGLTPYSRMGDGRAVLRSSIREFLCSEAMAGLGIPTTRALCVIGADAPVR
CCCEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHH
RETIETAAVVTRLAPSFVRFGHFEHFAANEKLPELRALADFVIDRFYPACRAEPQPYLAL
HHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCHHHCCCCCHHHHH
LREVGRRTAALIAQWQAVGFCHGVMNTDNMSILGLTLDYGPFGFLDGFDANHICNHSDTG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
GRYAYAQQPQIAYWNLFCLAQALLPLCGSDPTAFTDLSDEAQAQPAIDAAQEALLVYRDT
CEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
YGEAFYARYRAKLGLTQAHDGDEALFGDLFKLLHTQRADYTLFFRHLADVRRDDTPAQAQ
CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHH
ARTVRDVFFDRDSADAWLAAYRQRLQTEPAPDAARAEAMRRVNPKYVLRNHLAEIAIRRA
HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHC
GEKDFSEVENLRAVLARPFDDHPGFEHYAGPAPDWAASLEVSCSS
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11823852