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The map label for this gene is yhjC [H]

Identifier: 17546448

GI number: 17546448

Start: 1850171

End: 1851091

Strand: Reverse

Name: yhjC [H]

Synonym: RSc1729

Alternate gene names: 17546448

Gene position: 1851091-1850171 (Counterclockwise)

Preceding gene: 17546450

Following gene: 17546442

Centisome position: 49.81

GC content: 70.79

Gene sequence:

>921_bases
ATGTCCAACCCGCTGGAAACGATGCAGATCTTCATCCGCGTGGCCGAGCTCGCCAGCTTCACGCGCGCGGCCGAAAGCCT
GGGAATTCCCAAGCCGGCCGCCTCCGTGGCGGTGCAGCAGCTGGAGACGCTGCTCGGCACGCGCCTGCTGCATCGGACCA
CGCGCAAGGTCCAGCTCACGCAGGACGGCCAGGCCTTCTTCGAGCGCAGCCAGGACCTGCTGGCCGACATGGAAGAGCTG
CAGACGATGTTCCGCCAGAGCCCGCAGGCGCTGCGCGGCCGGCTGCGCGTCGACATGCCGGCGGGCGTCGCGCGCAAAGT
CGTCATCCCCGCCCTGCCCGCCTTCCTGGATGCCCATCCGCAGCTCGAGATCGAGCTCTCCAGCACCGACCGCCGCGTCG
ACCTGGTCCGCGAAGGCTTCGACTGCGTGCTGCGCATCGGCACGCTCGGCGACAGCAGCCTGATCGCCCGCCCGCTCGGC
CAGCTGCCGCAGATGAACTGCGCCAGCCCCGCCTACATCGCGCGCTACGGCATGCCGCGCTCGCTGGACGACCTCGACCA
TCACCGCCTCGTCCACTACGTGCAGACCCTGGGCACCAAGGCGCCGGGCTGGGAATACCGCATCGACGGACGGACGGCCC
ATCGCCCCATGCCGGGGGTGGTGACGGTCAGCACGGCCGAGAGCTACGAAGCCGCCTGCCAGGCCGGGCTGGGGATCATC
CAGGCGCCGGTGTCCGTGCTCGCGCCACAGGTCGCGCGCGGCGAGCTGGTGGAGGTGCTGCCGCAGTACCGGCCGGCGCC
GATGCCGGTGTCGCTGGTGTATCCGAACCGGCGCAACCTGCCGGTGCGGGTGCAGGTGTTCATGCACTGGGTCGCCGAAC
AGCTCGCGCCGCACCTGGCGCCGATCACGCCGGACGCTTAG

Upstream 100 bases:

>100_bases
CGTGAACACCTGCATGTTATTGGGCGACAAACACGGAATAAATCTCGATTATTCTATTGCTGTGTTTTTAATCCAATAAC
AATCGCCACCCTTGCCCGCC

Downstream 100 bases:

>100_bases
CGCGCCCCGAAGGCGCGCCGGCATGCGCCCGCCCCGGGCAAGCGCCTCAGGCGTCCCCGAACGTCGAGGCCGGCAGTCCC
AGCAGTTGCTCGAGCTGGTT

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MSNPLETMQIFIRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLTQDGQAFFERSQDLLADMEEL
QTMFRQSPQALRGRLRVDMPAGVARKVVIPALPAFLDAHPQLEIELSSTDRRVDLVREGFDCVLRIGTLGDSSLIARPLG
QLPQMNCASPAYIARYGMPRSLDDLDHHRLVHYVQTLGTKAPGWEYRIDGRTAHRPMPGVVTVSTAESYEAACQAGLGII
QAPVSVLAPQVARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMHWVAEQLAPHLAPITPDA

Sequences:

>Translated_306_residues
MSNPLETMQIFIRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLTQDGQAFFERSQDLLADMEEL
QTMFRQSPQALRGRLRVDMPAGVARKVVIPALPAFLDAHPQLEIELSSTDRRVDLVREGFDCVLRIGTLGDSSLIARPLG
QLPQMNCASPAYIARYGMPRSLDDLDHHRLVHYVQTLGTKAPGWEYRIDGRTAHRPMPGVVTVSTAESYEAACQAGLGII
QAPVSVLAPQVARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMHWVAEQLAPHLAPITPDA
>Mature_305_residues
SNPLETMQIFIRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLTQDGQAFFERSQDLLADMEELQ
TMFRQSPQALRGRLRVDMPAGVARKVVIPALPAFLDAHPQLEIELSSTDRRVDLVREGFDCVLRIGTLGDSSLIARPLGQ
LPQMNCASPAYIARYGMPRSLDDLDHHRLVHYVQTLGTKAPGWEYRIDGRTAHRPMPGVVTVSTAESYEAACQAGLGIIQ
APVSVLAPQVARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMHWVAEQLAPHLAPITPDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=45.1178451178451, Blast_Score=275, Evalue=4e-75,
Organism=Escherichia coli, GI1786401, Length=299, Percent_Identity=34.7826086956522, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1789639, Length=288, Percent_Identity=29.5138888888889, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=34.5637583892617, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1787589, Length=280, Percent_Identity=30.7142857142857, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1787128, Length=299, Percent_Identity=28.7625418060201, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1789440, Length=300, Percent_Identity=27.3333333333333, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1789173, Length=189, Percent_Identity=26.4550264550265, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1790011, Length=305, Percent_Identity=24.2622950819672, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788706, Length=301, Percent_Identity=23.2558139534884, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786508, Length=92, Percent_Identity=33.695652173913, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786713, Length=291, Percent_Identity=27.1477663230241, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787601, Length=122, Percent_Identity=27.0491803278689, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786448, Length=300, Percent_Identity=23, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790399, Length=280, Percent_Identity=25.7142857142857, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33815; Mature: 33683

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPLETMQIFIRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLT
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
QDGQAFFERSQDLLADMEELQTMFRQSPQALRGRLRVDMPAGVARKVVIPALPAFLDAHP
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEECCCCCHHHHHHHHHHHHHHCCCC
QLEIELSSTDRRVDLVREGFDCVLRIGTLGDSSLIARPLGQLPQMNCASPAYIARYGMPR
CEEEEECCCCHHHHHHHCCHHHEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCC
SLDDLDHHRLVHYVQTLGTKAPGWEYRIDGRTAHRPMPGVVTVSTAESYEAACQAGLGII
CCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEEECHHHHHHHHHHCCHHH
QAPVSVLAPQVARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMHWVAEQLAPHLA
HHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC
PITPDA
CCCCCC
>Mature Secondary Structure 
SNPLETMQIFIRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLT
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
QDGQAFFERSQDLLADMEELQTMFRQSPQALRGRLRVDMPAGVARKVVIPALPAFLDAHP
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEECCCCCHHHHHHHHHHHHHHCCCC
QLEIELSSTDRRVDLVREGFDCVLRIGTLGDSSLIARPLGQLPQMNCASPAYIARYGMPR
CEEEEECCCCHHHHHHHCCHHHEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCC
SLDDLDHHRLVHYVQTLGTKAPGWEYRIDGRTAHRPMPGVVTVSTAESYEAACQAGLGII
CCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEEECHHHHHHHHHHCCHHH
QAPVSVLAPQVARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMHWVAEQLAPHLA
HHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC
PITPDA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]