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The map label for this gene is yagI [H]

Identifier: 17546329

GI number: 17546329

Start: 1731106

End: 1731906

Strand: Reverse

Name: yagI [H]

Synonym: RSc1610

Alternate gene names: 17546329

Gene position: 1731906-1731106 (Counterclockwise)

Preceding gene: 17546335

Following gene: 17546324

Centisome position: 46.6

GC content: 66.79

Gene sequence:

>801_bases
ATGGCAGAAGCAGACAAGGAGCCCGGCAAGACATCCATCCAGGTCATCGAGCGCATGATGCTGCTGCTCGATGCGCTGGC
GGGGCATGCCGACCCCGTCAGCCTGAAAGCATTGTCCGCCAGCACCGGCCTGCATCCGTCCACGGCCCACCGCATTCTCA
ACGACATGGTGGCCTGCCGCTTCGTCGATCGCTCCGACCCCGGCAGCTATCGCCTCGGCATGCGCCTGCTGGAGCTCGGC
AACCTGGTCAAGGCACGGCTGTCCGTGCGCGAAGCCGCGCTGGCGCCGATGCGTGCCCTGCACCGCCTCACCGGCCAGAC
CGTCAATCTATCGGTACGCCAGGGCGACGAGATCGTCTATATCGAACGCGCCTACAGCGAGCGCTCGGGCATGCAAGTGG
TGCGCGCTATCGGCGGCCGTGCGCCACTGCATCTGACGTCGGTCGGCAAGCTGTTCCTGGCCGCGGACGAGATCGGCCGC
GTGCGGGCGTATGCCACGCGCACCGGCCTGTCCGGTCACACCCGCACGTCGATCACCGACCTGCCCAAGCTGGAGCGTGA
ACTGAGTTGGGTCCGTACCAACGGCTATGCGCGCGACAACGAAGAACTGGAGCTGGGCGTGCGCTGCATCGCCGCCGGCA
TCTACGACGACTCGCGCCACCTGGTGGCGGGGCTGTCGCTGTCGGCGCCGGCAGACCGCCTGCAAGACAGCTGGCTCGAC
AACCTGAAAGACACCGCCCTGCAGATCTCCAAGGGCATGGGATTCATCCCCGAGGAACAGCCGGTGCTGCGCGCGGAATG
A

Upstream 100 bases:

>100_bases
CCGAGCACGCCTTCGAAAAAGCCAGGAATCCTGCATCGGGAGGGTGCGCATTTTCACATCGTGGGATAGAATTTTGCATC
GCATTCCACCCCCTGCACCC

Downstream 100 bases:

>100_bases
TCCGACGCGCGCGTCGCCCAACAAAAAAGCGCGTCCATGACGCGCTTTTTTGTTGGGGCCGAAACAGGCGCAACGCTCAG
GTACCGTGCGTCTGCTCGGA

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MAEADKEPGKTSIQVIERMMLLLDALAGHADPVSLKALSASTGLHPSTAHRILNDMVACRFVDRSDPGSYRLGMRLLELG
NLVKARLSVREAALAPMRALHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADEIGR
VRAYATRTGLSGHTRTSITDLPKLERELSWVRTNGYARDNEELELGVRCIAAGIYDDSRHLVAGLSLSAPADRLQDSWLD
NLKDTALQISKGMGFIPEEQPVLRAE

Sequences:

>Translated_266_residues
MAEADKEPGKTSIQVIERMMLLLDALAGHADPVSLKALSASTGLHPSTAHRILNDMVACRFVDRSDPGSYRLGMRLLELG
NLVKARLSVREAALAPMRALHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADEIGR
VRAYATRTGLSGHTRTSITDLPKLERELSWVRTNGYARDNEELELGVRCIAAGIYDDSRHLVAGLSLSAPADRLQDSWLD
NLKDTALQISKGMGFIPEEQPVLRAE
>Mature_265_residues
AEADKEPGKTSIQVIERMMLLLDALAGHADPVSLKALSASTGLHPSTAHRILNDMVACRFVDRSDPGSYRLGMRLLELGN
LVKARLSVREAALAPMRALHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADEIGRV
RAYATRTGLSGHTRTSITDLPKLERELSWVRTNGYARDNEELELGVRCIAAGIYDDSRHLVAGLSLSAPADRLQDSWLDN
LKDTALQISKGMGFIPEEQPVLRAE

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=253, Percent_Identity=33.596837944664, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1789999, Length=263, Percent_Identity=31.9391634980989, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1786715, Length=247, Percent_Identity=32.3886639676113, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788131, Length=261, Percent_Identity=32.183908045977, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082359, Length=247, Percent_Identity=29.5546558704453, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1790752, Length=219, Percent_Identity=29.2237442922374, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788581, Length=260, Percent_Identity=26.1538461538462, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29135; Mature: 29004

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEADKEPGKTSIQVIERMMLLLDALAGHADPVSLKALSASTGLHPSTAHRILNDMVACR
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
FVDRSDPGSYRLGMRLLELGNLVKARLSVREAALAPMRALHRLTGQTVNLSVRQGDEIVY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEE
IERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADEIGRVRAYATRTGLSGHTRTSITD
EEECCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LPKLERELSWVRTNGYARDNEELELGVRCIAAGIYDDSRHLVAGLSLSAPADRLQDSWLD
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEECCCCCCCCEEECCCCCCCHHHHHHHHHH
NLKDTALQISKGMGFIPEEQPVLRAE
HHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AEADKEPGKTSIQVIERMMLLLDALAGHADPVSLKALSASTGLHPSTAHRILNDMVACR
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
FVDRSDPGSYRLGMRLLELGNLVKARLSVREAALAPMRALHRLTGQTVNLSVRQGDEIVY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEE
IERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADEIGRVRAYATRTGLSGHTRTSITD
EEECCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LPKLERELSWVRTNGYARDNEELELGVRCIAAGIYDDSRHLVAGLSLSAPADRLQDSWLD
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEECCCCCCCCEEECCCCCCCHHHHHHHHHH
NLKDTALQISKGMGFIPEEQPVLRAE
HHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]