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The map label for this gene is rci [H]

Identifier: 17546273

GI number: 17546273

Start: 1669739

End: 1670803

Strand: Reverse

Name: rci [H]

Synonym: RSc1554

Alternate gene names: 17546273

Gene position: 1670803-1669739 (Counterclockwise)

Preceding gene: 17546275

Following gene: 17546269

Centisome position: 44.96

GC content: 59.62

Gene sequence:

>1065_bases
ATGGGCACGATCATCGAGAAGTACACGAAGCGAGGCGAAGTCCGGTTCCAGGCAAAGATTCGCCGCACTGGTGTCCCGAT
TGCCTCGAAAGTATTCCCTTCCCGGGAAGAAGCAGAGGCTTGGATACAGGCCACCGAGCCTGAGCTGCAGGCTCGGTCCC
GACAGGCTGCTCGCCAACAAGCCCAGGCGAAGCTGATAGCAAAGTTCAAAGACCGCCCGCGCATCGTTGCCGACTTGCTC
CACCGGCACATGCAAGAGGAGACTGTCCGCAAAAAGGGAGCGGAGGCTGAGACCCACCACATCAGTAGCATCCTGCGGTA
CCCGCTTGCCCGCATCCATTTGGACAACCTGACACGCAGCGACATCAAGGAATGGCGAGACCAAAGGCTGCAGGACGTTG
CGCCCAGTACCGTCAATCGAGAACTAAACATCATCAACGCGGCACTCAAGGTGGCCGTTCACGAATGGGACGTTGCGATC
TGCCAAAGCGTGCTCACGTCTGTGCGCCGCCCAAGCAATCCGCCGGGGCGTGTACGAAGGCTGTCCCCCGAGGAGGAAGC
CGCACTGAGACAGGCAGGCGAGGAAACGCGGAATCCCTACATCGTGCCCATCTTGGATTTGGCCCTAAACACGGCCATGC
GGCGCGGTGAAATACTCGGGCTGGAGTGGGAGCGCATCAGCTTCGCTCACCGCTCTATTCAGCTCATCGAGACGAAGAAT
GGAACGCCCCGAGGTGTGCCTCTTTCGCGGCATGCGATGAAGGTACTGGCTACGCTGAAACAGGTGGCGGCCCACGAACT
TGGCTACGAGGGCGAGCTGAACTCTGGTCCGGTGTTTCCTGGTCTTACCGCCAACGCTTTCAAGCTGGCGTTCAACCGCA
TGATGGAGCGCGCAGGGTTGGAGAACTTCCGGTTCCACGACCTGAGGCACGAGGCCACGAGCCGCCTCTTTGAGAAAGGG
CTATCCGTCATGGAGGTGGCTTCCATTACCGGGCACAAGGACATCAGGATGCTTCAGCGCTACACCCACCTACAGGTCAA
GGACTTGGCGGCGAAGCTGGACTAG

Upstream 100 bases:

>100_bases
GCACCATCGCCCCGCGCCCGCAATGGGCGCACTCAATTCGCACTGAGGAACGGGCAGTACAGCAATGTCCCTGTGCATCC
ACACACGAAGGATGACAGGC

Downstream 100 bases:

>100_bases
CGGTAGGCACCCGGCGCCATCCTAAGATGGAGCCGAGGCCTACCCTTTGCGGTGCAGGCTACTCGCTGGCGCGAACCGGC
CGGTAGTTGGCCAGCGCCCA

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MGTIIEKYTKRGEVRFQAKIRRTGVPIASKVFPSREEAEAWIQATEPELQARSRQAARQQAQAKLIAKFKDRPRIVADLL
HRHMQEETVRKKGAEAETHHISSILRYPLARIHLDNLTRSDIKEWRDQRLQDVAPSTVNRELNIINAALKVAVHEWDVAI
CQSVLTSVRRPSNPPGRVRRLSPEEEAALRQAGEETRNPYIVPILDLALNTAMRRGEILGLEWERISFAHRSIQLIETKN
GTPRGVPLSRHAMKVLATLKQVAAHELGYEGELNSGPVFPGLTANAFKLAFNRMMERAGLENFRFHDLRHEATSRLFEKG
LSVMEVASITGHKDIRMLQRYTHLQVKDLAAKLD

Sequences:

>Translated_354_residues
MGTIIEKYTKRGEVRFQAKIRRTGVPIASKVFPSREEAEAWIQATEPELQARSRQAARQQAQAKLIAKFKDRPRIVADLL
HRHMQEETVRKKGAEAETHHISSILRYPLARIHLDNLTRSDIKEWRDQRLQDVAPSTVNRELNIINAALKVAVHEWDVAI
CQSVLTSVRRPSNPPGRVRRLSPEEEAALRQAGEETRNPYIVPILDLALNTAMRRGEILGLEWERISFAHRSIQLIETKN
GTPRGVPLSRHAMKVLATLKQVAAHELGYEGELNSGPVFPGLTANAFKLAFNRMMERAGLENFRFHDLRHEATSRLFEKG
LSVMEVASITGHKDIRMLQRYTHLQVKDLAAKLD
>Mature_353_residues
GTIIEKYTKRGEVRFQAKIRRTGVPIASKVFPSREEAEAWIQATEPELQARSRQAARQQAQAKLIAKFKDRPRIVADLLH
RHMQEETVRKKGAEAETHHISSILRYPLARIHLDNLTRSDIKEWRDQRLQDVAPSTVNRELNIINAALKVAVHEWDVAIC
QSVLTSVRRPSNPPGRVRRLSPEEEAALRQAGEETRNPYIVPILDLALNTAMRRGEILGLEWERISFAHRSIQLIETKNG
TPRGVPLSRHAMKVLATLKQVAAHELGYEGELNSGPVFPGLTANAFKLAFNRMMERAGLENFRFHDLRHEATSRLFEKGL
SVMEVASITGHKDIRMLQRYTHLQVKDLAAKLD

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=222, Percent_Identity=29.2792792792793, Blast_Score=78, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40304; Mature: 40173

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTIIEKYTKRGEVRFQAKIRRTGVPIASKVFPSREEAEAWIQATEPELQARSRQAARQQ
CCCHHHHHHCCCCEEEEEHHHHCCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
AQAKLIAKFKDRPRIVADLLHRHMQEETVRKKGAEAETHHISSILRYPLARIHLDNLTRS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
DIKEWRDQRLQDVAPSTVNRELNIINAALKVAVHEWDVAICQSVLTSVRRPSNPPGRVRR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
LSPEEEAALRQAGEETRNPYIVPILDLALNTAMRRGEILGLEWERISFAHRSIQLIETKN
CCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCEECCCHHHHHHHHHHEEEEECCC
GTPRGVPLSRHAMKVLATLKQVAAHELGYEGELNSGPVFPGLTANAFKLAFNRMMERAGL
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
ENFRFHDLRHEATSRLFEKGLSVMEVASITGHKDIRMLQRYTHLQVKDLAAKLD
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GTIIEKYTKRGEVRFQAKIRRTGVPIASKVFPSREEAEAWIQATEPELQARSRQAARQQ
CCHHHHHHCCCCEEEEEHHHHCCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
AQAKLIAKFKDRPRIVADLLHRHMQEETVRKKGAEAETHHISSILRYPLARIHLDNLTRS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
DIKEWRDQRLQDVAPSTVNRELNIINAALKVAVHEWDVAICQSVLTSVRRPSNPPGRVRR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
LSPEEEAALRQAGEETRNPYIVPILDLALNTAMRRGEILGLEWERISFAHRSIQLIETKN
CCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCEECCCHHHHHHHHHHEEEEECCC
GTPRGVPLSRHAMKVLATLKQVAAHELGYEGELNSGPVFPGLTANAFKLAFNRMMERAGL
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
ENFRFHDLRHEATSRLFEKGLSVMEVASITGHKDIRMLQRYTHLQVKDLAAKLD
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]