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The map label for this gene is 17546162

Identifier: 17546162

GI number: 17546162

Start: 1545732

End: 1546328

Strand: Direct

Name: 17546162

Synonym: RSc1443

Alternate gene names: NA

Gene position: 1545732-1546328 (Clockwise)

Preceding gene: 17546161

Following gene: 17546168

Centisome position: 41.59

GC content: 70.35

Gene sequence:

>597_bases
GTGACCCAACTTACGCTGCCCGGATTCGAAGCGATACCGCAGGTGCCCGCGCACCGCCTGTTCCTGGCGGTCAAGCCCGA
TGCGGATGCGGCCAGACGCATCGCGCAGCGGGTCGCGCTGCTGCGGCCGGACGTCGGCTTCAAGGCCAGGCCGCTGCGCG
TGGAGCGGCTGCACGTCACGCTGCATCACCTGGGGGATTTCGTCGAACTGCCGGACACCCTGGTGGCGCGTGCCTGCGAG
GCCGCGGCCGGCGTTGCGCTGCCGCCGTTCGAGGTGATATTCGACCAGGTGGTGAGCTTCCACGGCCGGCGCGACCACCG
GCCCTTCGTCCTGACGGGCGGTGTCGGCCTGCATGCCTTGATCGACTTCCAGCACGCGCTGGGCGCTGCGCTCGAGCGCG
CCGGGCTGCGTGTTCCGCAGGCGCGCTTCGTGCCGCACGTGACCCTGCTGTACGACCGCGGCGGCTTTGCGCCGAAGCCG
ATCGAGCCGATCGCCTGGACGGTGCGCGAGTTCGTGCTGATCGACAGCTGGCTCGGCAGGACGCGCTATGACGAGAAGGG
ACGATGGCCGCTGCGGGAGGGCGGCCTATCGTCCTGA

Upstream 100 bases:

>100_bases
GCTTGTCTGCGCGCCGATCGCGCATCATGAATCATGGGCAGGATGTCATCTGGCCGTCGATAATGGACAGGTTCCGACTC
ACGCGCCATGCCATTCTGAT

Downstream 100 bases:

>100_bases
GCGTCGGCCGGATTCGGCCGTGTCAGGCGGATGTGCCGGGCAGTGCGCAGCTGTCGGGGCCGCAGGCCGGCGCGGCTTCA
TGCACGCCGGCTGCCGCGGG

Product: ligase

Products: NA

Alternate protein names: Phosphoesterase HXTX; 2 5' RNA Ligase; Ligase; Ligase Protein; 2h Phosphoesterase

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MTQLTLPGFEAIPQVPAHRLFLAVKPDADAARRIAQRVALLRPDVGFKARPLRVERLHVTLHHLGDFVELPDTLVARACE
AAAGVALPPFEVIFDQVVSFHGRRDHRPFVLTGGVGLHALIDFQHALGAALERAGLRVPQARFVPHVTLLYDRGGFAPKP
IEPIAWTVREFVLIDSWLGRTRYDEKGRWPLREGGLSS

Sequences:

>Translated_198_residues
MTQLTLPGFEAIPQVPAHRLFLAVKPDADAARRIAQRVALLRPDVGFKARPLRVERLHVTLHHLGDFVELPDTLVARACE
AAAGVALPPFEVIFDQVVSFHGRRDHRPFVLTGGVGLHALIDFQHALGAALERAGLRVPQARFVPHVTLLYDRGGFAPKP
IEPIAWTVREFVLIDSWLGRTRYDEKGRWPLREGGLSS
>Mature_197_residues
TQLTLPGFEAIPQVPAHRLFLAVKPDADAARRIAQRVALLRPDVGFKARPLRVERLHVTLHHLGDFVELPDTLVARACEA
AAGVALPPFEVIFDQVVSFHGRRDHRPFVLTGGVGLHALIDFQHALGAALERAGLRVPQARFVPHVTLLYDRGGFAPKPI
EPIAWTVREFVLIDSWLGRTRYDEKGRWPLREGGLSS

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22020; Mature: 21889

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLTLPGFEAIPQVPAHRLFLAVKPDADAARRIAQRVALLRPDVGFKARPLRVERLHVT
CCCCCCCCHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHH
LHHLGDFVELPDTLVARACEAAAGVALPPFEVIFDQVVSFHGRRDHRPFVLTGGVGLHAL
HHHHCCHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHH
IDFQHALGAALERAGLRVPQARFVPHVTLLYDRGGFAPKPIEPIAWTVREFVLIDSWLGR
HHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC
TRYDEKGRWPLREGGLSS
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TQLTLPGFEAIPQVPAHRLFLAVKPDADAARRIAQRVALLRPDVGFKARPLRVERLHVT
CCCCCCCHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHH
LHHLGDFVELPDTLVARACEAAAGVALPPFEVIFDQVVSFHGRRDHRPFVLTGGVGLHAL
HHHHCCHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHH
IDFQHALGAALERAGLRVPQARFVPHVTLLYDRGGFAPKPIEPIAWTVREFVLIDSWLGR
HHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC
TRYDEKGRWPLREGGLSS
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA