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The map label for this gene is tRso10b [C]

Identifier: 17546154

GI number: 17546154

Start: 1539489

End: 1540091

Strand: Direct

Name: tRso10b [C]

Synonym: RSc1435

Alternate gene names: 17546154

Gene position: 1539489-1540091 (Clockwise)

Preceding gene: 17546153

Following gene: 17546157

Centisome position: 41.42

GC content: 63.35

Gene sequence:

>603_bases
ATGCGTGTGCACAGCTTGCTGCTTGAGCGCAGGCCGACGCCACCGCGTCCACCGCGCCGGCATGACGGCAAGGTCGCCGT
GGCCAAGAGCAACCAGCGCTGGTGCTCCGATGGCTTCGAGTTCCGCTGCGACAACGGCGAGCCGCTGCGGGTGACGTTCG
CGCTGGATTGCTGCGACCGCGAGGCGATGAGCTGGGTGGCGACGACCGGCGGCTACAGCGGCGACGTAGTACGCGACGTG
ATGCTGGCGGCCGTCGAGCAGCGCTTCGGCAATGTTCCGAAAGCGCCAGCGGAAATTGAATGGCTGACGGACAACGGCTC
AGGCTACATTGCTGGGAAGACTCGCGAGTTCGCCACGGACATTGGCTTGAAGCCATTGACGACACCGGTTTGCAGCCCGC
AGAGCAACGGCATGGCCGAGAGCTTCGTGAAGACGATGAAGCGCGACTACGTCGCCTTCATGCCCAAGCCTGACGCGGCC
ACAGCGACGCGCAACCTCGCCATCGCGTTCGAGCATTACAACGAGCAGCATCCCCATAGCGCACTGAAATATCGCTCGCC
ACGCGAGTTCAGGCGCAGGACGGAATCATCAACTCAAGTGTGA

Upstream 100 bases:

>100_bases
CTTGCCGAGCTATGGCTACCGGCGGGTCTGGGGCAGATTGCGGCGCGAACGTGAGCGTCAATGCGAAGCGCCGATCAATG
CCAAGCGTGTCTATCGGGTC

Downstream 100 bases:

>100_bases
GGCGGTGTCCGGAGATGCGGGGGCAAATCCAAGCTGAATCAACAACAAGGAAAAAGGCCGCTCCGTGAACTGACCCCGTA
AAGTTGGACGGGTAATTTAG

Product: ISRSO10-transposase ORFB protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MRVHSLLLERRPTPPRPPRRHDGKVAVAKSNQRWCSDGFEFRCDNGEPLRVTFALDCCDREAMSWVATTGGYSGDVVRDV
MLAAVEQRFGNVPKAPAEIEWLTDNGSGYIAGKTREFATDIGLKPLTTPVCSPQSNGMAESFVKTMKRDYVAFMPKPDAA
TATRNLAIAFEHYNEQHPHSALKYRSPREFRRRTESSTQV

Sequences:

>Translated_200_residues
MRVHSLLLERRPTPPRPPRRHDGKVAVAKSNQRWCSDGFEFRCDNGEPLRVTFALDCCDREAMSWVATTGGYSGDVVRDV
MLAAVEQRFGNVPKAPAEIEWLTDNGSGYIAGKTREFATDIGLKPLTTPVCSPQSNGMAESFVKTMKRDYVAFMPKPDAA
TATRNLAIAFEHYNEQHPHSALKYRSPREFRRRTESSTQV
>Mature_200_residues
MRVHSLLLERRPTPPRPPRRHDGKVAVAKSNQRWCSDGFEFRCDNGEPLRVTFALDCCDREAMSWVATTGGYSGDVVRDV
MLAAVEQRFGNVPKAPAEIEWLTDNGSGYIAGKTREFATDIGLKPLTTPVCSPQSNGMAESFVKTMKRDYVAFMPKPDAA
TATRNLAIAFEHYNEQHPHSALKYRSPREFRRRTESSTQV

Specific function: Involved in the transposition of the insertion sequence is2 [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1790724, Length=194, Percent_Identity=67.0103092783505, Blast_Score=272, Evalue=1e-74,
Organism=Escherichia coli, GI1789424, Length=194, Percent_Identity=67.0103092783505, Blast_Score=272, Evalue=1e-74,
Organism=Escherichia coli, GI1789224, Length=194, Percent_Identity=67.0103092783505, Blast_Score=272, Evalue=1e-74,
Organism=Escherichia coli, GI1788305, Length=194, Percent_Identity=67.0103092783505, Blast_Score=272, Evalue=1e-74,
Organism=Escherichia coli, GI1787669, Length=194, Percent_Identity=67.0103092783505, Blast_Score=272, Evalue=1e-74,
Organism=Escherichia coli, GI1786558, Length=194, Percent_Identity=67.0103092783505, Blast_Score=272, Evalue=1e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR002514 [H]

Pfam domain/function: PF00665 rve; PF01527 Transposase_8 [H]

EC number: NA

Molecular weight: Translated: 22492; Mature: 22492

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVHSLLLERRPTPPRPPRRHDGKVAVAKSNQRWCSDGFEFRCDNGEPLRVTFALDCCDR
CCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCEEEEEEEEECCCH
EAMSWVATTGGYSGDVVRDVMLAAVEQRFGNVPKAPAEIEWLTDNGSGYIAGKTREFATD
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEECCCHHHHHH
IGLKPLTTPVCSPQSNGMAESFVKTMKRDYVAFMPKPDAATATRNLAIAFEHYNEQHPHS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCHHHCEEEEEEECCCCCCCCH
ALKYRSPREFRRRTESSTQV
HHHCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MRVHSLLLERRPTPPRPPRRHDGKVAVAKSNQRWCSDGFEFRCDNGEPLRVTFALDCCDR
CCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCEEEEEEEEECCCH
EAMSWVATTGGYSGDVVRDVMLAAVEQRFGNVPKAPAEIEWLTDNGSGYIAGKTREFATD
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEECCCHHHHHH
IGLKPLTTPVCSPQSNGMAESFVKTMKRDYVAFMPKPDAATATRNLAIAFEHYNEQHPHS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCHHHCEEEEEEECCCCCCCCH
ALKYRSPREFRRRTESSTQV
HHHCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA