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The map label for this gene is rbfA [H]

Identifier: 17546009

GI number: 17546009

Start: 1374909

End: 1375280

Strand: Direct

Name: rbfA [H]

Synonym: RSc1290

Alternate gene names: 17546009

Gene position: 1374909-1375280 (Clockwise)

Preceding gene: 17546008

Following gene: 17546010

Centisome position: 37.0

GC content: 63.71

Gene sequence:

>372_bases
ATGCCGAAGAAATCGGGATCGGCCTCGGGCCGCAACCTGCGCATCGCCGACCAGATCCAGCGCGATCTGGCCGAGCTGAT
CCAGCGCGAAATCAAGAACCCGGCGATGGGCCTGGTGACGCTGCAATCGGTGTCGCTCACGCCGGACTACGCGCACGCAA
AGATCTATTTCACCGTGCTGGGCGCCGAACCGGATGCCGCCGCCGCCATCCTGAACGAGAAGGCCGGCTATCTGCACTCG
CTGCTGTTCAAGCGCCTGCACATCCATACCGTGCCCACGCTGCATTTCCACTACGACGGTTCGGTCGAGCGCGGCATCGA
GATGTCGCGGCTGATCGATCAGGCCAACGCCTCGCGCGCCAAAGACGACTGA

Upstream 100 bases:

>100_bases
GGCGTGGTTTTGCGACGGTGGCCCGGGCGCGTCCCGCGCCACCGTTTTGTCTTTTGGGCGCAGGCTGCCGCCGGGCGTCC
ACCGTGTCGAGGAACACACT

Downstream 100 bases:

>100_bases
CGATGACCGAGCAACGCCCGTCCCAACAGGCGAAGCAGCCGCGCCGCGACGTGCACGGCGTGCTGCTGCTGGACAAGCCG
ATCGGCTGGTCGAGCAACGA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MPKKSGSASGRNLRIADQIQRDLAELIQREIKNPAMGLVTLQSVSLTPDYAHAKIYFTVLGAEPDAAAAILNEKAGYLHS
LLFKRLHIHTVPTLHFHYDGSVERGIEMSRLIDQANASRAKDD

Sequences:

>Translated_123_residues
MPKKSGSASGRNLRIADQIQRDLAELIQREIKNPAMGLVTLQSVSLTPDYAHAKIYFTVLGAEPDAAAAILNEKAGYLHS
LLFKRLHIHTVPTLHFHYDGSVERGIEMSRLIDQANASRAKDD
>Mature_122_residues
PKKSGSASGRNLRIADQIQRDLAELIQREIKNPAMGLVTLQSVSLTPDYAHAKIYFTVLGAEPDAAAAILNEKAGYLHSL
LFKRLHIHTVPTLHFHYDGSVERGIEMSRLIDQANASRAKDD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=108, Percent_Identity=40.7407407407407, Blast_Score=82, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13607; Mature: 13476

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKKSGSASGRNLRIADQIQRDLAELIQREIKNPAMGLVTLQSVSLTPDYAHAKIYFTVL
CCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEEEE
GAEPDAAAAILNEKAGYLHSLLFKRLHIHTVPTLHFHYDGSVERGIEMSRLIDQANASRA
CCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCHHHHHHHHHHCCCCC
KDD
CCC
>Mature Secondary Structure 
PKKSGSASGRNLRIADQIQRDLAELIQREIKNPAMGLVTLQSVSLTPDYAHAKIYFTVL
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEEEE
GAEPDAAAAILNEKAGYLHSLLFKRLHIHTVPTLHFHYDGSVERGIEMSRLIDQANASRA
CCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCHHHHHHHHHHCCCCC
KDD
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA