Click here to switch to the map view.

The map label for this gene is ugpQ [H]

Identifier: 17545987

GI number: 17545987

Start: 1347576

End: 1348334

Strand: Direct

Name: ugpQ [H]

Synonym: RSc1268

Alternate gene names: 17545987

Gene position: 1347576-1348334 (Clockwise)

Preceding gene: 17545986

Following gene: 17545988

Centisome position: 36.26

GC content: 72.73

Gene sequence:

>759_bases
ATGAGCGAAGCACGCGCCCTGCCGGCTTGGCCGTATCCGCGCGCCATTGCCCACCGGGGCGCGGGCAAGCTCGCGCCCGA
GAACACGCTGGCGGCGTTCCGCCACGGCGCCGGGTTCGGCTACCGCATGTTCGAGTTCGATGTGAAGCTGTCGGGTGACG
GCGTGGCCGTGCTGCTGCACGATGCCACGCTGGAGCGCACCACCAGCGGCCACGGGCGCATCGACGCGCTGTCGTTCGGC
CAGATCGCGCAGCTGGACGCCGGCAGCTGGCACAGCCCGGCCTTTGCCGGCGAGCCGGTGCCGACGCTGGCCGCCGTCGC
CCGCTACCTGCGCGCCAACGGCTTGCTGGCCAATATCGAGATCAAACCGGTGCCCGGCACGGAGTGGCGGACCGGCGCGG
CGCTCGCGCTGGATGCCCGCACCCTGTGGGCCGACGCCGGGGTGCCGCCGCTGCTATCGTCGTTCTCGGAGACGGCGCTG
GCCGCCGCGCGCGAGGCCGCGCCGGAGCTGCCGCGCGCCTTGCTGCTGGACACCCTGCCGGCGGACTGGCTGGACCGCCT
GCGCGCGCTGGATTGCGTCGCGCTCGATGCCAACCATCGTGCCCTGACGCCGGAGGTGATCGCCGCTGCCCATGCGGCGG
GCTTCCGCGTCTGCTGCTATACCGTCAACGATGTGGAACGGGCCCGCCTGCTGTGGGGCGCCGGACTGGACGGCCTGATC
ACCGACCGGGTCGACTGCATCGAACCATCCGGCACGTGA

Upstream 100 bases:

>100_bases
ACGCCAGCGTCAAGGCCGGCGACCGGCTGCCCATCACCGCCTCGGCCGACCATCTGCACTGGTTCGACCCGCAGACCACC
CGCCGCATCGAGGCCCTGGC

Downstream 100 bases:

>100_bases
CGGCGCCGCTTTCTGATGCAACAAAGCAACGTTTTATTGTTGTGCCAAGGAATCAGAATATTGCCCATAAACGTGCTATG
CTTTTTGCCGCGAAGACTTT

Product: cytoplasmic glycerophosphodiester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MSEARALPAWPYPRAIAHRGAGKLAPENTLAAFRHGAGFGYRMFEFDVKLSGDGVAVLLHDATLERTTSGHGRIDALSFG
QIAQLDAGSWHSPAFAGEPVPTLAAVARYLRANGLLANIEIKPVPGTEWRTGAALALDARTLWADAGVPPLLSSFSETAL
AAAREAAPELPRALLLDTLPADWLDRLRALDCVALDANHRALTPEVIAAAHAAGFRVCCYTVNDVERARLLWGAGLDGLI
TDRVDCIEPSGT

Sequences:

>Translated_252_residues
MSEARALPAWPYPRAIAHRGAGKLAPENTLAAFRHGAGFGYRMFEFDVKLSGDGVAVLLHDATLERTTSGHGRIDALSFG
QIAQLDAGSWHSPAFAGEPVPTLAAVARYLRANGLLANIEIKPVPGTEWRTGAALALDARTLWADAGVPPLLSSFSETAL
AAAREAAPELPRALLLDTLPADWLDRLRALDCVALDANHRALTPEVIAAAHAAGFRVCCYTVNDVERARLLWGAGLDGLI
TDRVDCIEPSGT
>Mature_251_residues
SEARALPAWPYPRAIAHRGAGKLAPENTLAAFRHGAGFGYRMFEFDVKLSGDGVAVLLHDATLERTTSGHGRIDALSFGQ
IAQLDAGSWHSPAFAGEPVPTLAAVARYLRANGLLANIEIKPVPGTEWRTGAALALDARTLWADAGVPPLLSSFSETALA
AAREAAPELPRALLLDTLPADWLDRLRALDCVALDANHRALTPEVIAAAHAAGFRVCCYTVNDVERARLLWGAGLDGLIT
DRVDCIEPSGT

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycerophosphoryl diester phosphodiesterase family [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=102, Percent_Identity=47.0588235294118, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI284055245, Length=98, Percent_Identity=44.8979591836735, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI284055240, Length=98, Percent_Identity=44.8979591836735, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI21361649, Length=111, Percent_Identity=41.4414414414414, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI284055242, Length=98, Percent_Identity=44.8979591836735, Blast_Score=71, Evalue=1e-12,
Organism=Escherichia coli, GI1789858, Length=246, Percent_Identity=50.4065040650407, Blast_Score=233, Evalue=7e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 26763; Mature: 26631

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEARALPAWPYPRAIAHRGAGKLAPENTLAAFRHGAGFGYRMFEFDVKLSGDGVAVLLH
CCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEE
DATLERTTSGHGRIDALSFGQIAQLDAGSWHSPAFAGEPVPTLAAVARYLRANGLLANIE
CCHHHHCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEE
IKPVPGTEWRTGAALALDARTLWADAGVPPLLSSFSETALAAAREAAPELPRALLLDTLP
EEECCCCCCCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
ADWLDRLRALDCVALDANHRALTPEVIAAAHAAGFRVCCYTVNDVERARLLWGAGLDGLI
HHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHCCEEEEEEECCCHHHHHHHHCCCCCCHH
TDRVDCIEPSGT
HCCHHCCCCCCC
>Mature Secondary Structure 
SEARALPAWPYPRAIAHRGAGKLAPENTLAAFRHGAGFGYRMFEFDVKLSGDGVAVLLH
CCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEE
DATLERTTSGHGRIDALSFGQIAQLDAGSWHSPAFAGEPVPTLAAVARYLRANGLLANIE
CCHHHHCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEE
IKPVPGTEWRTGAALALDARTLWADAGVPPLLSSFSETALAAAREAAPELPRALLLDTLP
EEECCCCCCCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
ADWLDRLRALDCVALDANHRALTPEVIAAAHAAGFRVCCYTVNDVERARLLWGAGLDGLI
HHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHCCEEEEEEECCCHHHHHHHHCCCCCCHH
TDRVDCIEPSGT
HCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2541415; 1851953; 8041620; 9278503; 3062310 [H]