| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is iolE [H]
Identifier: 17545957
GI number: 17545957
Start: 1310672
End: 1311601
Strand: Reverse
Name: iolE [H]
Synonym: RSc1238
Alternate gene names: 17545957
Gene position: 1311601-1310672 (Counterclockwise)
Preceding gene: 17545958
Following gene: 17545956
Centisome position: 35.29
GC content: 66.45
Gene sequence:
>930_bases ATGACCTGGAACGTTCGTATCGGCATCAACCCGCTGTCGTGGATGAACGATGACCTGCCGTCGCTCGGCGGCGAAACGCC GCTCGAGACCGCCCTGAAGGAAGGCGCGGAAATCGGCTATGCGGGCTTCGAGCTCGGCAACAAGTTTCCGAAGAGCGGCC CCGAGCTGAAAGCGAAGTTGAACGAATACGGGCTGGTCTGCGTGTCGGGCTGGTACTCCGGCTTTCTCGCGGAGGTCGAG CCCGGCAAGACCGATGCCGAGGCGGTCACCACCGAGATCGAGCGCGGCAAGGCTCACATGGCCAAGCTGCGGTACAACGA CGTGAAGGTGGTCGTGTACGGCGAATGCGCCGGCACGATCCAGGGCCAGATCGACACGCCGGTCTCGAAGCGGCCCCGCT TCCCCGACGCCGCCGCCTGGCAGCGCTACGCGCAACGCCTGAACGCGTTCGGCGCGTATCTGCTCGAGACCTACGGGATC AAGCTCGCCTACCACCATCACATGGGCGCGTACGTCGAATCCCCCGGCGACGTGGACCGCCTGATGTCGCTGACCGACCC GCAGAAGGTCTTCCTGCTGCTCGACACCGGCCACGCATACTTCGGCGGCGCGGCCGACCCCGTCGCACTGCTCAAGCGGC ACGTGTCGCGCGTCGCGCACGTCCATTGCAAGGACGTCCGCCCGCAGTTGATCGCCCAGGCCCGCAACGACAGCTGGAGC TTCCTGAACGGCGTGATCAACGGCACCTTCACCGTGCCGGGCGACGGCGCACTCGACTACGAGGCCACGCTGCGCACACT CAAGGACGCCGGCTACGAAGGCTGGCTCGTCGTCGAAGCCGAGCAGGACCCGGCTGTCGCGCCGAGCTATCAATACGCGA AGAAGGGCTACGAAACGCTGCGCGCGCTGGTCGACCGGCTGGGCGCCTGA
Upstream 100 bases:
>100_bases ACCTCGAAGCCAAGACACGGCAGCGGCACTGACCTGCCTGGCGCGGGCAGCCGCAGCGGCCCACGCCGATTCCCCCCATC ATCACCCGAGGAAGATTCAT
Downstream 100 bases:
>100_bases CCTGCGCCGCCACCGCTTTGCGAAAGGAGCTTTCCATGACGATCTCTCCATTGCTGGTCAAGGCGTTGCCGAAGCGCGAG ATATGCAATGTCACGCCGGA
Product: myo-inositol catabolism protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 309; Mature: 308
Protein sequence:
>309_residues MTWNVRIGINPLSWMNDDLPSLGGETPLETALKEGAEIGYAGFELGNKFPKSGPELKAKLNEYGLVCVSGWYSGFLAEVE PGKTDAEAVTTEIERGKAHMAKLRYNDVKVVVYGECAGTIQGQIDTPVSKRPRFPDAAAWQRYAQRLNAFGAYLLETYGI KLAYHHHMGAYVESPGDVDRLMSLTDPQKVFLLLDTGHAYFGGAADPVALLKRHVSRVAHVHCKDVRPQLIAQARNDSWS FLNGVINGTFTVPGDGALDYEATLRTLKDAGYEGWLVVEAEQDPAVAPSYQYAKKGYETLRALVDRLGA
Sequences:
>Translated_309_residues MTWNVRIGINPLSWMNDDLPSLGGETPLETALKEGAEIGYAGFELGNKFPKSGPELKAKLNEYGLVCVSGWYSGFLAEVE PGKTDAEAVTTEIERGKAHMAKLRYNDVKVVVYGECAGTIQGQIDTPVSKRPRFPDAAAWQRYAQRLNAFGAYLLETYGI KLAYHHHMGAYVESPGDVDRLMSLTDPQKVFLLLDTGHAYFGGAADPVALLKRHVSRVAHVHCKDVRPQLIAQARNDSWS FLNGVINGTFTVPGDGALDYEATLRTLKDAGYEGWLVVEAEQDPAVAPSYQYAKKGYETLRALVDRLGA >Mature_308_residues TWNVRIGINPLSWMNDDLPSLGGETPLETALKEGAEIGYAGFELGNKFPKSGPELKAKLNEYGLVCVSGWYSGFLAEVEP GKTDAEAVTTEIERGKAHMAKLRYNDVKVVVYGECAGTIQGQIDTPVSKRPRFPDAAAWQRYAQRLNAFGAYLLETYGIK LAYHHHMGAYVESPGDVDRLMSLTDPQKVFLLLDTGHAYFGGAADPVALLKRHVSRVAHVHCKDVRPQLIAQARNDSWSF LNGVINGTFTVPGDGALDYEATLRTLKDAGYEGWLVVEAEQDPAVAPSYQYAKKGYETLRALVDRLGA
Specific function: Involved in rhizopine (L-3-O-methyl-scyllo-inosamine) catabolism [H]
COG id: COG1082
COG function: function code G; Sugar phosphate isomerases/epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the iolE/mocC family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013022 - InterPro: IPR012307 [H]
Pfam domain/function: PF01261 AP_endonuc_2 [H]
EC number: NA
Molecular weight: Translated: 33911; Mature: 33780
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTWNVRIGINPLSWMNDDLPSLGGETPLETALKEGAEIGYAGFELGNKFPKSGPELKAKL CEEEEEECCCHHHHCCCCHHHCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCCCHHHHHH NEYGLVCVSGWYSGFLAEVEPGKTDAEAVTTEIERGKAHMAKLRYNDVKVVVYGECAGTI HHCCEEEEECCHHCEEEECCCCCCCHHHHHHHHHHCHHHHHHEEECCEEEEEEECCCCEE QGQIDTPVSKRPRFPDAAAWQRYAQRLNAFGAYLLETYGIKLAYHHHMGAYVESPGDVDR CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCEECCCCCHHH LMSLTDPQKVFLLLDTGHAYFGGAADPVALLKRHVSRVAHVHCKDVRPQLIAQARNDSWS HHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHH FLNGVINGTFTVPGDGALDYEATLRTLKDAGYEGWLVVEAEQDPAVAPSYQYAKKGYETL HHHHHHCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHH RALVDRLGA HHHHHHHCC >Mature Secondary Structure TWNVRIGINPLSWMNDDLPSLGGETPLETALKEGAEIGYAGFELGNKFPKSGPELKAKL EEEEEECCCHHHHCCCCHHHCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCCCHHHHHH NEYGLVCVSGWYSGFLAEVEPGKTDAEAVTTEIERGKAHMAKLRYNDVKVVVYGECAGTI HHCCEEEEECCHHCEEEECCCCCCCHHHHHHHHHHCHHHHHHEEECCEEEEEEECCCCEE QGQIDTPVSKRPRFPDAAAWQRYAQRLNAFGAYLLETYGIKLAYHHHMGAYVESPGDVDR CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCEECCCCCHHH LMSLTDPQKVFLLLDTGHAYFGGAADPVALLKRHVSRVAHVHCKDVRPQLIAQARNDSWS HHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHH FLNGVINGTFTVPGDGALDYEATLRTLKDAGYEGWLVVEAEQDPAVAPSYQYAKKGYETL HHHHHHCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHH RALVDRLGA HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7845353 [H]