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The map label for this gene is yfdE [H]

Identifier: 17545916

GI number: 17545916

Start: 1265688

End: 1266905

Strand: Direct

Name: yfdE [H]

Synonym: RSc1197

Alternate gene names: 17545916

Gene position: 1265688-1266905 (Clockwise)

Preceding gene: 17545915

Following gene: 17545917

Centisome position: 34.06

GC content: 71.43

Gene sequence:

>1218_bases
TTGATCACCATGCCGACACAGGTTTTGCAGGACATCCGCGTGCTCGAACTCGGGCAACTGATCGCCGGGCCGTTTGCCGC
CAAGACGCTGGCGGACTTCGGCGCGCAGGTCATCAAGATCGAACCGCCGGGGCAGGGCGACCCGCTGCGCAAATGGCGGA
TGCTGCATGAGGGCACCTCGGTGTGGTGGGAGGCGCAGTCGCGCAACAAGCAGTCGGTGTGCGTCGACCTGCGTGTGCCG
GAGGGGCAGGACGTGGTGCGCCGGCTCGCGGCCGAGGCCGATGTGCTGATCGAGAATTTCCGGCCCGGCACGATGGAGAA
GTGGGGGCTGTCGTACGAGGCGCTGTCGGCCATCAACCCGGGGCTGATCATGCTGCGCGTGTCGGGCTACGGCCAGACCG
GGCCCAAGCGCGATGAGCCCGGCTTCGCGGCCATCGCCGAGGCCATGGCCGGCCTGCGCTACCTGACGGGAGAGCCGGGC
CGGCCGCCGGCCCGCGCCGGGCTGTCGCTGGGCGACACCATCGCCGGCCTGCACGGTGCCCTGGGCGTGCTGCTGGCGCT
GTACGAGCGCGATGCGCGCGGCGGCAAGGGGCAGGTGATCGACGTGGCGCTGTACGAGTCGGTGTTCAACCTGACGGAGA
GCCTGTTGCCCGAATACGCCGTGTTCGGCGCGGTGCGCCAGCCGGCGGGCGGCGCGCTTCCTGGCATCGCGCCATCCAAT
GCCTACCGCTGCGCGGGCGGCGCGTACGTGCTGATCGCCGCCAACGGCGACAACATTTTTCGCCGCCTGATGCTGCGCAT
GGGCCGCCCCGACCTTGCCGACGACCCCGGCCTCGCCCGCAACGACGGCCGTGCCGCGCGCGCCGACGAGATCGACGCCG
CCATCAACGCCTGGACCGGCACGCTGTCCATCGACGACGTCCTGGCCGCCCTGCACGAGGCTGACGTGCCCGGCGGGCGC
ATCTACACCGTGGCCGACATCGCGGCCGATCCGCATTACCGCGCGCGCGGCGTGATCGAGACCGTGCGCGCGCAATCGGG
CATCGACGTGGACATGCCGGGCGTGGTGCCCAAGCTGTCCGGCACGCCAGGGGCGGTGCAGGCGAGCGCGCCGCGCCTCG
GCCAGCATACGCGCGAGGTCCTGCGCAGGCACGGCCTGACCGACGCGCAGATCGACGCGCTGGCCTCCCAGGGCGTCATC
GCGGACGCCGCAAAATAG

Upstream 100 bases:

>100_bases
ACCCCGATGCGCTGACCAGCTCGGCGCGCCTGCTGATGACGCATCTGCTCGGCAATCCCGCCGCGCTCCGACTCTGACCT
TCTCCCACTTTCTCTGGCGC

Downstream 100 bases:

>100_bases
GACGAACTCGCATGCCGACAGGTGGAGCGTTGCGGTAACATCCGCGGCATTTGATCAGGCAGTCAACCCATTCGAAATGC
AGGAGATGAGGATCATGAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MITMPTQVLQDIRVLELGQLIAGPFAAKTLADFGAQVIKIEPPGQGDPLRKWRMLHEGTSVWWEAQSRNKQSVCVDLRVP
EGQDVVRRLAAEADVLIENFRPGTMEKWGLSYEALSAINPGLIMLRVSGYGQTGPKRDEPGFAAIAEAMAGLRYLTGEPG
RPPARAGLSLGDTIAGLHGALGVLLALYERDARGGKGQVIDVALYESVFNLTESLLPEYAVFGAVRQPAGGALPGIAPSN
AYRCAGGAYVLIAANGDNIFRRLMLRMGRPDLADDPGLARNDGRAARADEIDAAINAWTGTLSIDDVLAALHEADVPGGR
IYTVADIAADPHYRARGVIETVRAQSGIDVDMPGVVPKLSGTPGAVQASAPRLGQHTREVLRRHGLTDAQIDALASQGVI
ADAAK

Sequences:

>Translated_405_residues
MITMPTQVLQDIRVLELGQLIAGPFAAKTLADFGAQVIKIEPPGQGDPLRKWRMLHEGTSVWWEAQSRNKQSVCVDLRVP
EGQDVVRRLAAEADVLIENFRPGTMEKWGLSYEALSAINPGLIMLRVSGYGQTGPKRDEPGFAAIAEAMAGLRYLTGEPG
RPPARAGLSLGDTIAGLHGALGVLLALYERDARGGKGQVIDVALYESVFNLTESLLPEYAVFGAVRQPAGGALPGIAPSN
AYRCAGGAYVLIAANGDNIFRRLMLRMGRPDLADDPGLARNDGRAARADEIDAAINAWTGTLSIDDVLAALHEADVPGGR
IYTVADIAADPHYRARGVIETVRAQSGIDVDMPGVVPKLSGTPGAVQASAPRLGQHTREVLRRHGLTDAQIDALASQGVI
ADAAK
>Mature_405_residues
MITMPTQVLQDIRVLELGQLIAGPFAAKTLADFGAQVIKIEPPGQGDPLRKWRMLHEGTSVWWEAQSRNKQSVCVDLRVP
EGQDVVRRLAAEADVLIENFRPGTMEKWGLSYEALSAINPGLIMLRVSGYGQTGPKRDEPGFAAIAEAMAGLRYLTGEPG
RPPARAGLSLGDTIAGLHGALGVLLALYERDARGGKGQVIDVALYESVFNLTESLLPEYAVFGAVRQPAGGALPGIAPSN
AYRCAGGAYVLIAANGDNIFRRLMLRMGRPDLADDPGLARNDGRAARADEIDAAINAWTGTLSIDDVLAALHEADVPGGR
IYTVADIAADPHYRARGVIETVRAQSGIDVDMPGVVPKLSGTPGAVQASAPRLGQHTREVLRRHGLTDAQIDALASQGVI
ADAAK

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=397, Percent_Identity=30.7304785894207, Blast_Score=189, Evalue=4e-48,
Organism=Homo sapiens, GI300863124, Length=423, Percent_Identity=30.0236406619385, Blast_Score=177, Evalue=1e-44,
Organism=Homo sapiens, GI300863126, Length=397, Percent_Identity=28.463476070529, Blast_Score=152, Evalue=7e-37,
Organism=Homo sapiens, GI42794625, Length=409, Percent_Identity=31.5403422982885, Blast_Score=135, Evalue=6e-32,
Organism=Homo sapiens, GI266456254, Length=409, Percent_Identity=31.5403422982885, Blast_Score=135, Evalue=7e-32,
Organism=Homo sapiens, GI13376042, Length=423, Percent_Identity=26.4775413711584, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI266458393, Length=294, Percent_Identity=34.0136054421769, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI266458397, Length=250, Percent_Identity=38, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI266458395, Length=126, Percent_Identity=42.8571428571429, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI42822893, Length=126, Percent_Identity=42.8571428571429, Blast_Score=92, Evalue=7e-19,
Organism=Escherichia coli, GI87082093, Length=373, Percent_Identity=32.4396782841823, Blast_Score=200, Evalue=2e-52,
Organism=Escherichia coli, GI1788717, Length=416, Percent_Identity=29.8076923076923, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1786222, Length=399, Percent_Identity=25.8145363408521, Blast_Score=129, Evalue=4e-31,
Organism=Caenorhabditis elegans, GI115535051, Length=273, Percent_Identity=31.5018315018315, Blast_Score=107, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI32564160, Length=281, Percent_Identity=30.9608540925267, Blast_Score=102, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24648431, Length=376, Percent_Identity=32.7127659574468, Blast_Score=205, Evalue=6e-53,
Organism=Drosophila melanogaster, GI24585488, Length=265, Percent_Identity=33.9622641509434, Blast_Score=114, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42956; Mature: 42956

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITMPTQVLQDIRVLELGQLIAGPFAAKTLADFGAQVIKIEPPGQGDPLRKWRMLHEGTS
CCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCC
VWWEAQSRNKQSVCVDLRVPEGQDVVRRLAAEADVLIENFRPGTMEKWGLSYEALSAINP
EEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHCCC
GLIMLRVSGYGQTGPKRDEPGFAAIAEAMAGLRYLTGEPGRPPARAGLSLGDTIAGLHGA
CEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHH
LGVLLALYERDARGGKGQVIDVALYESVFNLTESLLPEYAVFGAVRQPAGGALPGIAPSN
HHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
AYRCAGGAYVLIAANGDNIFRRLMLRMGRPDLADDPGLARNDGRAARADEIDAAINAWTG
CEEECCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
TLSIDDVLAALHEADVPGGRIYTVADIAADPHYRARGVIETVRAQSGIDVDMPGVVPKLS
CCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
GTPGAVQASAPRLGQHTREVLRRHGLTDAQIDALASQGVIADAAK
CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MITMPTQVLQDIRVLELGQLIAGPFAAKTLADFGAQVIKIEPPGQGDPLRKWRMLHEGTS
CCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCC
VWWEAQSRNKQSVCVDLRVPEGQDVVRRLAAEADVLIENFRPGTMEKWGLSYEALSAINP
EEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHCCC
GLIMLRVSGYGQTGPKRDEPGFAAIAEAMAGLRYLTGEPGRPPARAGLSLGDTIAGLHGA
CEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHH
LGVLLALYERDARGGKGQVIDVALYESVFNLTESLLPEYAVFGAVRQPAGGALPGIAPSN
HHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
AYRCAGGAYVLIAANGDNIFRRLMLRMGRPDLADDPGLARNDGRAARADEIDAAINAWTG
CEEECCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
TLSIDDVLAALHEADVPGGRIYTVADIAADPHYRARGVIETVRAQSGIDVDMPGVVPKLS
CCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
GTPGAVQASAPRLGQHTREVLRRHGLTDAQIDALASQGVIADAAK
CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]