Click here to switch to the map view.

The map label for this gene is intB [H]

Identifier: 17545687

GI number: 17545687

Start: 1017298

End: 1018473

Strand: Reverse

Name: intB [H]

Synonym: RSc0968

Alternate gene names: 17545687

Gene position: 1018473-1017298 (Counterclockwise)

Preceding gene: 17545688

Following gene: 17545674

Centisome position: 27.4

GC content: 59.95

Gene sequence:

>1176_bases
ATGCCCCTCACCGATCTTTCCGCACGCAACGCCAAGCCCCAGGACAAGCCCTACCGCCTCGCCGATGGCCTGGGCATGTA
TCTGGAAGTCATGCCCAACGGCTCCAAGTACTGGCGCCTTAAATACCGCATTGCCGGAAAGGAAAAGCGGCTTGCCCTGG
GCGTCTACCCAAGTGTCGGCTTGGCCCAGGCCCGCACAGCGCGAGACGATGCCCGCCGCCTGATCGCCGCAGGCACCGAC
CCGTCGCAGGCCCGGAAAGAAGCCAAGCTGGCGACCACCACGGCCCGCACACACACTTTTGAAGTGGTGGCGCGGGAGTG
GCATGAAAAGCAGAGCGCCACATGGGTGCCGACTTACGCAACAAAAGTCTTGCACTCGCTGGAAACCGACATTTTTCCCG
ACCTGGGCGCGCGTCCCATCACAGAAATCACCGCCCCACAGATGCTGGCGACATTGCGCAAGGTGGAAAGCCGCGACGCG
CTTGAAACCGTGGCCCGTTTGCAACAACGTTGCTCTGCGGTATTCCGCTATGCCGTTGTCACAGGCCGCGCAGCACATAA
CCCTTGCACCGACCTGAAGGGCGCATTCAAGACCGCCAAGGTTCAGCATATGGCGCGCGTGCAAGCCAATGAAGTGCCGA
CGCTCATTAAAAATATTCGAGGCTACGACGGCGATCTAATCACACGCATTGCGCTGCAATTCATGGCGTTGACGTTTGTT
CGCACCAAGGAATTGATTGGGGCGCAATGGTCAGAGATTGATTTTGAGACGGAGGAATGGCGCATCCCCGCCGAGCGTAT
GAAGATGCGCGAACCGCATTTCGTCCCGCTGTCCTGGCAGGCAATTGCTCTGCTACGCGCAGCGGAGAAAATGACGGGGA
ACCGCCAGTACGTGTTTCAAAGCCCCAAGGGCAGGACGCACATCAGTAACAACACGATCCTCTATGCCCTGTACCGTCTG
GGCTACCACTCACGCATGACCGGCCACGGCTTCCGTGGTTTGGCCTCTACGATGCTGCACGAACAGGGATTCAACCCGGA
CGTGATTGAGCGCCAGTTGGCGCACGCCGAGCGCAACAAGGTGCGCGCCGCGTACAACCACGCGCAATACCTGCCGGAGC
GTCGCCGCATGATGCAGCATTGGGCCGACCATCTCGACCAGTTAGCGCAGGACTGA

Upstream 100 bases:

>100_bases
CGGGCATCCACCCGTGTGCATTTGCAGCCACCCCAACGCGGGGGCACAATCGGGGGCACTATTTCAGCCCCTGCCGGGCT
AATGCCCCCAACCCTCTGCG

Downstream 100 bases:

>100_bases
CGCATTCGGTAACTCCCTGGGGGGCTTGCAGCTTGCAAGCCCCTTTGCACATCACCCGCCCTGGGAGGACACAGGCAAAA
TGCCCCGTGGAATCCGTGGC

Product: cp4-like integrase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MPLTDLSARNAKPQDKPYRLADGLGMYLEVMPNGSKYWRLKYRIAGKEKRLALGVYPSVGLAQARTARDDARRLIAAGTD
PSQARKEAKLATTTARTHTFEVVAREWHEKQSATWVPTYATKVLHSLETDIFPDLGARPITEITAPQMLATLRKVESRDA
LETVARLQQRCSAVFRYAVVTGRAAHNPCTDLKGAFKTAKVQHMARVQANEVPTLIKNIRGYDGDLITRIALQFMALTFV
RTKELIGAQWSEIDFETEEWRIPAERMKMREPHFVPLSWQAIALLRAAEKMTGNRQYVFQSPKGRTHISNNTILYALYRL
GYHSRMTGHGFRGLASTMLHEQGFNPDVIERQLAHAERNKVRAAYNHAQYLPERRRMMQHWADHLDQLAQD

Sequences:

>Translated_391_residues
MPLTDLSARNAKPQDKPYRLADGLGMYLEVMPNGSKYWRLKYRIAGKEKRLALGVYPSVGLAQARTARDDARRLIAAGTD
PSQARKEAKLATTTARTHTFEVVAREWHEKQSATWVPTYATKVLHSLETDIFPDLGARPITEITAPQMLATLRKVESRDA
LETVARLQQRCSAVFRYAVVTGRAAHNPCTDLKGAFKTAKVQHMARVQANEVPTLIKNIRGYDGDLITRIALQFMALTFV
RTKELIGAQWSEIDFETEEWRIPAERMKMREPHFVPLSWQAIALLRAAEKMTGNRQYVFQSPKGRTHISNNTILYALYRL
GYHSRMTGHGFRGLASTMLHEQGFNPDVIERQLAHAERNKVRAAYNHAQYLPERRRMMQHWADHLDQLAQD
>Mature_390_residues
PLTDLSARNAKPQDKPYRLADGLGMYLEVMPNGSKYWRLKYRIAGKEKRLALGVYPSVGLAQARTARDDARRLIAAGTDP
SQARKEAKLATTTARTHTFEVVAREWHEKQSATWVPTYATKVLHSLETDIFPDLGARPITEITAPQMLATLRKVESRDAL
ETVARLQQRCSAVFRYAVVTGRAAHNPCTDLKGAFKTAKVQHMARVQANEVPTLIKNIRGYDGDLITRIALQFMALTFVR
TKELIGAQWSEIDFETEEWRIPAERMKMREPHFVPLSWQAIALLRAAEKMTGNRQYVFQSPKGRTHISNNTILYALYRLG
YHSRMTGHGFRGLASTMLHEQGFNPDVIERQLAHAERNKVRAAYNHAQYLPERRRMMQHWADHLDQLAQD

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788690, Length=379, Percent_Identity=39.3139841688654, Blast_Score=283, Evalue=1e-77,
Organism=Escherichia coli, GI1788974, Length=385, Percent_Identity=39.2207792207792, Blast_Score=280, Evalue=1e-76,
Organism=Escherichia coli, GI145693166, Length=391, Percent_Identity=41.1764705882353, Blast_Score=268, Evalue=6e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44619; Mature: 44488

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLTDLSARNAKPQDKPYRLADGLGMYLEVMPNGSKYWRLKYRIAGKEKRLALGVYPSVG
CCCCCCCCCCCCCCCCCEEHHCCCCEEEEEECCCCEEEEEEEEECCCCCEEEEECCCCCC
LAQARTARDDARRLIAAGTDPSQARKEAKLATTTARTHTFEVVAREWHEKQSATWVPTYA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
TKVLHSLETDIFPDLGARPITEITAPQMLATLRKVESRDALETVARLQQRCSAVFRYAVV
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGRAAHNPCTDLKGAFKTAKVQHMARVQANEVPTLIKNIRGYDGDLITRIALQFMALTFV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
RTKELIGAQWSEIDFETEEWRIPAERMKMREPHFVPLSWQAIALLRAAEKMTGNRQYVFQ
HHHHHHCCCHHCCCCCHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
SPKGRTHISNNTILYALYRLGYHSRMTGHGFRGLASTMLHEQGFNPDVIERQLAHAERNK
CCCCCCEECCCHHHHHHHHHCHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VRAAYNHAQYLPERRRMMQHWADHLDQLAQD
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PLTDLSARNAKPQDKPYRLADGLGMYLEVMPNGSKYWRLKYRIAGKEKRLALGVYPSVG
CCCCCCCCCCCCCCCCEEHHCCCCEEEEEECCCCEEEEEEEEECCCCCEEEEECCCCCC
LAQARTARDDARRLIAAGTDPSQARKEAKLATTTARTHTFEVVAREWHEKQSATWVPTYA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
TKVLHSLETDIFPDLGARPITEITAPQMLATLRKVESRDALETVARLQQRCSAVFRYAVV
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGRAAHNPCTDLKGAFKTAKVQHMARVQANEVPTLIKNIRGYDGDLITRIALQFMALTFV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
RTKELIGAQWSEIDFETEEWRIPAERMKMREPHFVPLSWQAIALLRAAEKMTGNRQYVFQ
HHHHHHCCCHHCCCCCHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
SPKGRTHISNNTILYALYRLGYHSRMTGHGFRGLASTMLHEQGFNPDVIERQLAHAERNK
CCCCCCEECCCHHHHHHHHHCHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VRAAYNHAQYLPERRRMMQHWADHLDQLAQD
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]