Click here to switch to the map view.

The map label for this gene is yoaJ [H]

Identifier: 17545537

GI number: 17545537

Start: 861683

End: 862453

Strand: Direct

Name: yoaJ [H]

Synonym: RSc0818

Alternate gene names: 17545537

Gene position: 861683-862453 (Clockwise)

Preceding gene: 17545536

Following gene: 17545540

Centisome position: 23.19

GC content: 64.07

Gene sequence:

>771_bases
ATGCTGCTGTCTCTTTCGGTTTGGAGCCTGCATGCCAATGGCCAGGTCGTTGCGGCCGACAATGCCACCGCCGCGCAGCC
TTCCTGTCTCGGCACCGGCACCACCGCGCCGGCCAACACCTGGGGCAGCACGTTCACCGGCATTGCGACCGCAACCGGCT
CGGGCTATTCGGGCGGTGCCTTCCTGCTTGATCCGATCACCAAGGACCGGGAAATCACCGCGCTCAACCCGGCGCAGGCA
AACCTCGGCGGCATCCCCGCGGCAATGGCCGGGGCCTATCTGCGCGTGCAGGGCCCCAAGGGCTGTACCACGGTGTACGT
GACCGATCTCTACCCCGAAGCAGCATCGGGCGGTCTGGATCTTTCATACAACGCCTTCGCCAAGATCGGCGACCTGCAGC
AGGGACGGATTCCGGTCCAGTGGAGGCTGATCCCGGGCCCGGTCACCGGCAACGTCGTCTACCGCATCAAAGAGGGCAGC
ACGATGTGGTGGGCCGCGATCCAGGTGCGCAATCACACCTTCCCAGTGGTGAAGCTGGAAGTCTTCCAGGGCAAGGCCTG
GGTGAGCCTGCCGAAAGCAGACTACAACCACTTTGTCGGCACGCAGCTCGGCGACAAGCCCCTGGTCATCCGGATCACCG
ACATCCGGGGACGGATTCTCGTCGACAAGCTGCCCCCGCTGCTCAAGGATTGCACACCCCAGAAGGCGGGCGAGGCATCG
CCGTGCAGCAAGCCCTATTTTGTCCAGGGGAAGGTGCAGTTTTCCGAGTAA

Upstream 100 bases:

>100_bases
TCATGTCGAAAATATTCTGGTCTATGGTGAATAGCCTTTCCACGCTCAATGCAGGAGGTGCGACATGCCATGTTTGAAGA
AATGGCGATGGATTGCGGTC

Downstream 100 bases:

>100_bases
GCGGTGGTGGGTGATCAGGGCTCGCCCGCGAGCTGCCGATGGATGTCCATGCGATCGAAGTGCGCTCGCTTCTCGATGAT
CTTCCCATCCGAGATCGTCA

Product: endoglucanase

Products: NA

Alternate protein names: EXLX1 [H]

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MLLSLSVWSLHANGQVVAADNATAAQPSCLGTGTTAPANTWGSTFTGIATATGSGYSGGAFLLDPITKDREITALNPAQA
NLGGIPAAMAGAYLRVQGPKGCTTVYVTDLYPEAASGGLDLSYNAFAKIGDLQQGRIPVQWRLIPGPVTGNVVYRIKEGS
TMWWAAIQVRNHTFPVVKLEVFQGKAWVSLPKADYNHFVGTQLGDKPLVIRITDIRGRILVDKLPPLLKDCTPQKAGEAS
PCSKPYFVQGKVQFSE

Sequences:

>Translated_256_residues
MLLSLSVWSLHANGQVVAADNATAAQPSCLGTGTTAPANTWGSTFTGIATATGSGYSGGAFLLDPITKDREITALNPAQA
NLGGIPAAMAGAYLRVQGPKGCTTVYVTDLYPEAASGGLDLSYNAFAKIGDLQQGRIPVQWRLIPGPVTGNVVYRIKEGS
TMWWAAIQVRNHTFPVVKLEVFQGKAWVSLPKADYNHFVGTQLGDKPLVIRITDIRGRILVDKLPPLLKDCTPQKAGEAS
PCSKPYFVQGKVQFSE
>Mature_256_residues
MLLSLSVWSLHANGQVVAADNATAAQPSCLGTGTTAPANTWGSTFTGIATATGSGYSGGAFLLDPITKDREITALNPAQA
NLGGIPAAMAGAYLRVQGPKGCTTVYVTDLYPEAASGGLDLSYNAFAKIGDLQQGRIPVQWRLIPGPVTGNVVYRIKEGS
TMWWAAIQVRNHTFPVVKLEVFQGKAWVSLPKADYNHFVGTQLGDKPLVIRITDIRGRILVDKLPPLLKDCTPQKAGEAS
PCSKPYFVQGKVQFSE

Specific function: May promote colonization of plant roots. May cause loosening and extension of plant cell walls by disrupting non- covalent bonding between cellulose microfibrils and matrix glucans. Has very low expansin activity (in vitro). No enzymatic activity has been

COG id: COG4305

COG function: function code G; Endoglucanase C-terminal domain/subunit and related proteins

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 expansin-like EG45 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR007117 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 27217; Mature: 27217

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSLSVWSLHANGQVVAADNATAAQPSCLGTGTTAPANTWGSTFTGIATATGSGYSGGA
CEEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCE
FLLDPITKDREITALNPAQANLGGIPAAMAGAYLRVQGPKGCTTVYVTDLYPEAASGGLD
EEECCCCCCCEEEEECCCCCCCCCCCHHHCCEEEEEECCCCCEEEEEEECCCCCCCCCEE
LSYNAFAKIGDLQQGRIPVQWRLIPGPVTGNVVYRIKEGSTMWWAAIQVRNHTFPVVKLE
ECHHHHEECCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEEEEEECCCCCEEEEE
VFQGKAWVSLPKADYNHFVGTQLGDKPLVIRITDIRGRILVDKLPPLLKDCTPQKAGEAS
EECCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCHHHHHCCCCCCCCCC
PCSKPYFVQGKVQFSE
CCCCCEEEEEEEEECC
>Mature Secondary Structure
MLLSLSVWSLHANGQVVAADNATAAQPSCLGTGTTAPANTWGSTFTGIATATGSGYSGGA
CEEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCE
FLLDPITKDREITALNPAQANLGGIPAAMAGAYLRVQGPKGCTTVYVTDLYPEAASGGLD
EEECCCCCCCEEEEECCCCCCCCCCCHHHCCEEEEEECCCCCEEEEEEECCCCCCCCCEE
LSYNAFAKIGDLQQGRIPVQWRLIPGPVTGNVVYRIKEGSTMWWAAIQVRNHTFPVVKLE
ECHHHHEECCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEEEEEECCCCCEEEEE
VFQGKAWVSLPKADYNHFVGTQLGDKPLVIRITDIRGRILVDKLPPLLKDCTPQKAGEAS
EECCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCHHHHHCCCCCCCCCC
PCSKPYFVQGKVQFSE
CCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]