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The map label for this gene is 17545522

Identifier: 17545522

GI number: 17545522

Start: 850252

End: 851664

Strand: Reverse

Name: 17545522

Synonym: RSc0803

Alternate gene names: NA

Gene position: 851664-850252 (Counterclockwise)

Preceding gene: 17545523

Following gene: 17545521

Centisome position: 22.92

GC content: 71.69

Gene sequence:

>1413_bases
ATGCGACCGTCGTTGCGGATACGGCAGTGGATCGGCTGGCTGGCGGCAGGCCTGGCCGCCGCCTGGAGCGGCCTTGCCAT
CGCGGCCGCCGCCCCGGTGATGGTGCTGCCGCTGACCGGCGCCATCGGGCCGGCCAGCGCGGCCTACGTGGTGCACGGGC
TGGAGCTGGCCCGCAAGGAAGGCATGCAGCTCGTGGTGCTGCAGATGGACACGCCGGGCGGGCTCGATGCCTCGATGCGG
CAGATCATCCAGGCCATTCTCGCCTCGCCGGTGCCGGTGGCGGGCTATGTGGCGCCGGGCGGCGCGCGGGCAGCCAGTGC
CGGCACCTACATTCTCTATGCCAGCCACATCGCCGCGATGGCACCGGCGACCAACCTGGGCGCCGCCTCACCGGTGGCGA
TCGGCATCGGCGGCCATGCGCCCACCGGGCCGACGCCCACCCCCGGCGACACCGCCAAGCCGGCCAGCGCACCGGCGGCG
GCCTCCGGCAACGAAGACACCCTCGCCCGCAAGCAGATGCACGACGCGGCCGCCTACATCCGCGGCCTGGCCCACCTGCG
CGGGCGCAACGCCGAATGGGCCGAGCGCGCCGTGCGCGAAGCGGTCAGCCTGTCGGCCGACGAAGCCGCCACGCAGCGCG
TGATCGACCTGATCGCCACGAACATTCCCGACCTGCTCAGGCAAGTGGACGGACGCGCGCTGCGCACCGCCACGGGTCTG
GTCACGCTGCATACGGCAGGGGCCCCCACCGAGACACTCGAGCCCGACTGGCGCAACCACTTCCTGGCCGTCATCACCGA
TCCGAGCCTGGCCCTGCTGCTGCTGACGGTGGGCGTGTATGCGCTGATCTTCGAGTTCTCGACGCCGGGCATGGTGGTGC
CGGGCATCCTGGGGGCGATGTGCATCCTGGTGGCGCTGTACGGGCTGCAGATGCTGCCCATCAACTATGCCGGGCTGGCG
CTGCTGGCGCTCGGCCTGGGCTGCATGGTGGCCGAGGCCTTCCTGCCGACCTTCGGCGCGCTGGGCGTGGGCGGCATCAT
CGCCTTCATCCTGGGCGCGGTGATGCTGATCGATACGCAGACGCCGGGCTATGGCGTGCCGATCCCCGTGATCGTCGGGC
TCGCCTTCGTCAGCCTGACGGTGATCCTGGCGCTCTCCAGCCTGGCGGTCCGTGCCCGGCGTCGCCCCAAGGTATCCGGC
GGCGACACCCTGATCGGCATGACCGGCGAAGTCGTCGACGTCGACACACCGGAAGCGGACGCCGACAGCGACGGCTGGGC
ACACATCCGCGGCGAACGGTGGCGCGTGCGATGCGATGCCGGCATCACGCGCGGTGACCGCGTGCGCGTCATTGCCCGCC
ACGGGCTGACGCTGATGGTCGAGCCTGTCGCACCTGCGGCGGCGGCATCCTGA

Upstream 100 bases:

>100_bases
CCACCGGTGAGGCTGTCGCCGCCTAAACTGAATGCGAAGACCCCGCCGCAGGTCTAACAAGAAGCGCAAGCAAGCGCGGC
AGTAACGAACGGAGGCGCGC

Downstream 100 bases:

>100_bases
GGAGAATAAAAATGTTCTATGGCTTCTTCAGCGCAGGCGGCTTCATCTTCCTGATCGTGCTGCTGGTGATCTCGTCGTTC
CGCGTGCTGCGCGAGTACGA

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-Bound Serine Protease; Nodulation Protein NfeD; NfeD Protein; Nodulation Efficiency Protein D; Nodulation Competitiveness Protein NfeD; Membrane Bound Peptidase; Transmembrane Protein; NfeD Family Protein; Serine Protease; Membrane-Bound Serine Protease-Like Protein; Nodulation Efficiency Family Protein; Membrane-Bound Serine Protease ClpP Class; NfeD Nodulation Like Protein Membrane Protein; Nodulation Efficiency Protein Nfed; Nodulation Protein; Membrane-Bound Protease; NfeD-Like Family; Protease/Transporter; Membrane-Bound ClpP-Class Protease; S49 Family Serine Protease; Short-Chain Alcohol Dehydrogenase; Membrane-Bound Serine Protease NfeD-Like Protein; NfeD-Like Membrane-Bound Serine Protease; Nfed Family Protein; Nodulation Protein Nfed; Membrane-Bound Serine Protease Protein

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MRPSLRIRQWIGWLAAGLAAAWSGLAIAAAAPVMVLPLTGAIGPASAAYVVHGLELARKEGMQLVVLQMDTPGGLDASMR
QIIQAILASPVPVAGYVAPGGARAASAGTYILYASHIAAMAPATNLGAASPVAIGIGGHAPTGPTPTPGDTAKPASAPAA
ASGNEDTLARKQMHDAAAYIRGLAHLRGRNAEWAERAVREAVSLSADEAATQRVIDLIATNIPDLLRQVDGRALRTATGL
VTLHTAGAPTETLEPDWRNHFLAVITDPSLALLLLTVGVYALIFEFSTPGMVVPGILGAMCILVALYGLQMLPINYAGLA
LLALGLGCMVAEAFLPTFGALGVGGIIAFILGAVMLIDTQTPGYGVPIPVIVGLAFVSLTVILALSSLAVRARRRPKVSG
GDTLIGMTGEVVDVDTPEADADSDGWAHIRGERWRVRCDAGITRGDRVRVIARHGLTLMVEPVAPAAAAS

Sequences:

>Translated_470_residues
MRPSLRIRQWIGWLAAGLAAAWSGLAIAAAAPVMVLPLTGAIGPASAAYVVHGLELARKEGMQLVVLQMDTPGGLDASMR
QIIQAILASPVPVAGYVAPGGARAASAGTYILYASHIAAMAPATNLGAASPVAIGIGGHAPTGPTPTPGDTAKPASAPAA
ASGNEDTLARKQMHDAAAYIRGLAHLRGRNAEWAERAVREAVSLSADEAATQRVIDLIATNIPDLLRQVDGRALRTATGL
VTLHTAGAPTETLEPDWRNHFLAVITDPSLALLLLTVGVYALIFEFSTPGMVVPGILGAMCILVALYGLQMLPINYAGLA
LLALGLGCMVAEAFLPTFGALGVGGIIAFILGAVMLIDTQTPGYGVPIPVIVGLAFVSLTVILALSSLAVRARRRPKVSG
GDTLIGMTGEVVDVDTPEADADSDGWAHIRGERWRVRCDAGITRGDRVRVIARHGLTLMVEPVAPAAAAS
>Mature_470_residues
MRPSLRIRQWIGWLAAGLAAAWSGLAIAAAAPVMVLPLTGAIGPASAAYVVHGLELARKEGMQLVVLQMDTPGGLDASMR
QIIQAILASPVPVAGYVAPGGARAASAGTYILYASHIAAMAPATNLGAASPVAIGIGGHAPTGPTPTPGDTAKPASAPAA
ASGNEDTLARKQMHDAAAYIRGLAHLRGRNAEWAERAVREAVSLSADEAATQRVIDLIATNIPDLLRQVDGRALRTATGL
VTLHTAGAPTETLEPDWRNHFLAVITDPSLALLLLTVGVYALIFEFSTPGMVVPGILGAMCILVALYGLQMLPINYAGLA
LLALGLGCMVAEAFLPTFGALGVGGIIAFILGAVMLIDTQTPGYGVPIPVIVGLAFVSLTVILALSSLAVRARRRPKVSG
GDTLIGMTGEVVDVDTPEADADSDGWAHIRGERWRVRCDAGITRGDRVRVIARHGLTLMVEPVAPAAAAS

Specific function: Unknown

COG id: COG1030

COG function: function code O; Membrane-bound serine protease (ClpP class)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48369; Mature: 48369

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPSLRIRQWIGWLAAGLAAAWSGLAIAAAAPVMVLPLTGAIGPASAAYVVHGLELARKE
CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHC
GMQLVVLQMDTPGGLDASMRQIIQAILASPVPVAGYVAPGGARAASAGTYILYASHIAAM
CCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEHHHHHHH
APATNLGAASPVAIGIGGHAPTGPTPTPGDTAKPASAPAAASGNEDTLARKQMHDAAAYI
CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RGLAHLRGRNAEWAERAVREAVSLSADEAATQRVIDLIATNIPDLLRQVDGRALRTATGL
HHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEHHHCE
VTLHTAGAPTETLEPDWRNHFLAVITDPSLALLLLTVGVYALIFEFSTPGMVVPGILGAM
EEEEECCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHH
CILVALYGLQMLPINYAGLALLALGLGCMVAEAFLPTFGALGVGGIIAFILGAVMLIDTQ
HHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
TPGYGVPIPVIVGLAFVSLTVILALSSLAVRARRRPKVSGGDTLIGMTGEVVDVDTPEAD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECCCCCCC
ADSDGWAHIRGERWRVRCDAGITRGDRVRVIARHGLTLMVEPVAPAAAAS
CCCCCCEEECCCEEEEEECCCCCCCCEEEEEEECCCEEEEECCCCCCCCC
>Mature Secondary Structure
MRPSLRIRQWIGWLAAGLAAAWSGLAIAAAAPVMVLPLTGAIGPASAAYVVHGLELARKE
CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHC
GMQLVVLQMDTPGGLDASMRQIIQAILASPVPVAGYVAPGGARAASAGTYILYASHIAAM
CCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEHHHHHHH
APATNLGAASPVAIGIGGHAPTGPTPTPGDTAKPASAPAAASGNEDTLARKQMHDAAAYI
CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RGLAHLRGRNAEWAERAVREAVSLSADEAATQRVIDLIATNIPDLLRQVDGRALRTATGL
HHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEHHHCE
VTLHTAGAPTETLEPDWRNHFLAVITDPSLALLLLTVGVYALIFEFSTPGMVVPGILGAM
EEEEECCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHH
CILVALYGLQMLPINYAGLALLALGLGCMVAEAFLPTFGALGVGGIIAFILGAVMLIDTQ
HHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
TPGYGVPIPVIVGLAFVSLTVILALSSLAVRARRRPKVSGGDTLIGMTGEVVDVDTPEAD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECCCCCCC
ADSDGWAHIRGERWRVRCDAGITRGDRVRVIARHGLTLMVEPVAPAAAAS
CCCCCCEEECCCEEEEEECCCCCCCCEEEEEEECCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA