| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is yhjG [H]
Identifier: 17545492
GI number: 17545492
Start: 816559
End: 818781
Strand: Reverse
Name: yhjG [H]
Synonym: RSc0773
Alternate gene names: 17545492
Gene position: 818781-816559 (Counterclockwise)
Preceding gene: 17545494
Following gene: 17545486
Centisome position: 22.03
GC content: 71.03
Gene sequence:
>2223_bases ATGCGCACTTCCGCCAGAGTCATCCTCGGACTGGGCATCACCCCCATCGTCATCGTGGCGGCGGCGATCGTCTTCGTGCT GACGTTCGACTGGAACCGCGCCAAGCCCTATCTCAACGACCACGTGTCGCAGGCCGTCGGCCGCCCCTTCGCCATCAACG GCGACCTGGCGCTGACGTGGAAAAAGCCCGAAGGCGAATCCGGCTGGCGCGCCTACGTGCCGTGGCCGCGGCTGATCGCC AGCGACATCGCCATCGGCAACCCCGACTGGGCACGCCAGCCGCACGTGGCCACCGTGCAGCGGCTCACCTTCGTGCTGGA GGCGCTGCCGCTGCTGGCGCACCGCATCGTCATCCCGAGCGTGACGCTCGACACGCCGATGATCGCGCTCGAACGCGACA GCCAGAACCGCAACAACTGGACCTTCCACTTCGGCGCACAGGACAGCCAGCCCTCGGACTGGAAGCTGGAGCTGCGCGAG ATCGCCTTCAGCAAGGGCTCGGTCCAGCTGGATGACGAGGTCAAGCGCATCCACCTGGCCGCCACCCTCGACACGGTCGA CAACCAGGCGCTGTACACCGCCGCCAGCGGCACCGCCATCCGCGGCAGCGAGCCGGCGGCGCCTTCCGCGTCCGGCGCGG CCGCCTCCACGGCCCCCGCCGCGCCCGACCCGCAGCAGCCCTACGGCATCGCCTGGACCGTCAAGGGCACCTACAACAAC GCCGCCATCCGCGGCAGCGGCAAGGCCGGCGGCGTGCTGCGGCTGCAGGATGCGCGCCGGCCCTACCCGCTGCAGGCCGA CGTGACGGTCGGCAAGACCCGCATCGACCTGGCCGGCACCCTCACCAACCCATCCAGCCTGACCGCGCTGGACCTGCGCC TGCACCTGTCGGGCGCGAGCATGGCCCACCTGTATCCGCTGACCGGCGTGGTGCTGCCCGACACGCCGCCGTTCGACACG CGCGGGCGGCTGATCGGCGAGCTGCGCCGGCAGGGCTCGAGCTGGCGCTACGAGCAATTCACCGGCCGCGTGGGCGGCTC CGACCTGGGCGGCACGCTGACCTTCGCCATGCGCCCGGAGCCGGGACAGCGCCCGCAACTGACCGGCGAGCTGGTCTCGC ACCAGTTGTTGTTCGCCGACCTGGCCCCGATCATCGGCGCCGACTCCAACGCCAGCAAGCAGCGCCGCGACGCCCCGGTG CGCCAGCCGGCCGACAAGGTGCTGCCGGTCGAGCCGTTCCGCACCGACCGCTGGAACGCCATCGACGCCGACGTGAAGTT CACCGGCGAGCGCATCGTGCGCACCGCCGACCTGCCGATCGACCATCTCGTCACCCACATCAAGCTGCAGGACGCGGTGC TGACACTGGACCCGCTGAACTTCGGCGTCGCGGGCGGCACGCTCACCTCCAACCTGCGGCTCGACGGCCAGTCCGCGCCG ATGCAGGCGAGCGCGGCGCTGGCGGCGCGGCACTTCAAGATCCGGCAGCTGTTCCCGAACATCGAGTCGATGCACGCCAG CATCGGCGAGATCAACGGCGACGCACGGCTGTCGGCCACCGGCAACTCGGTCGCCGCGCTGCTGGGCGCGTCCAACGGCG AGCTGAAGATCCTGGTCGAGCAAGGCACCGTCAGCAAGTTCATCCTGGAAGCGATGGGCCTGAACGTCGGCAACGTGATC CTGACCAAGCTGTTCGGCGACAAGCAGGTCAGCATCAACTGCGCGGCCGGCGACTTCGCGGTCAGCGACGGCCTGGCGCA GGCGCGCACCTTCGTGGTCGACACGCAGGACGCGGTGATCGACGTGACCGGCGCCACCAGTTTCAAGCACGAGTCGCTGG ACTTCACCATCCACCCGGATTCGAAGGGGCTGCGGGTGTTCTCGCTGCGCACGCCGCTGTATGTGAAGGGCACGTACAAG CATCCGGACGTGTCCGTCAATCCGGCGGTGGTGGCCCTGCGCGCCGGTGGCGCGGTGGCGCTGGCGTTTGCCGCGCCGGT GGCGGCGGTGCTGCCGGTGCTCGAGCTCCAGCCCGCGCCCGACAGCCCGTGCGGCAAGCTGCTGGCCGACGTGCGCCAGC GGCCCACCGCGCCGCCGCCGGGCAAGGTGTACCGCAGCGGCCAGACCGGCCGCGCGGCGGACGGCTCGCCGAAGGACCCG GCGGCCGCGCCTGCACGGCAGCCTGCGCTGCCTTTGCGCGACCCGACCACGGCGGGAGGCTAG
Upstream 100 bases:
>100_bases ACACAATGGATTTCGGGACTGCGCCGAACTATATAACAACGGGCCCGGTCCGAAACCCCGTGCCACGCCGCCAATAAGAA GCCTCGCCGACAAGAACGCC
Downstream 100 bases:
>100_bases CCCCCACTACTGCGGCATCCGCCGCTTGGCGATCTCATCCGCCGTCAGCGCCGGCGTCGCCGGGTCGCCGAACTGCCTCG TCACATAGTTGGCCAATGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 740; Mature: 740
Protein sequence:
>740_residues MRTSARVILGLGITPIVIVAAAIVFVLTFDWNRAKPYLNDHVSQAVGRPFAINGDLALTWKKPEGESGWRAYVPWPRLIA SDIAIGNPDWARQPHVATVQRLTFVLEALPLLAHRIVIPSVTLDTPMIALERDSQNRNNWTFHFGAQDSQPSDWKLELRE IAFSKGSVQLDDEVKRIHLAATLDTVDNQALYTAASGTAIRGSEPAAPSASGAAASTAPAAPDPQQPYGIAWTVKGTYNN AAIRGSGKAGGVLRLQDARRPYPLQADVTVGKTRIDLAGTLTNPSSLTALDLRLHLSGASMAHLYPLTGVVLPDTPPFDT RGRLIGELRRQGSSWRYEQFTGRVGGSDLGGTLTFAMRPEPGQRPQLTGELVSHQLLFADLAPIIGADSNASKQRRDAPV RQPADKVLPVEPFRTDRWNAIDADVKFTGERIVRTADLPIDHLVTHIKLQDAVLTLDPLNFGVAGGTLTSNLRLDGQSAP MQASAALAARHFKIRQLFPNIESMHASIGEINGDARLSATGNSVAALLGASNGELKILVEQGTVSKFILEAMGLNVGNVI LTKLFGDKQVSINCAAGDFAVSDGLAQARTFVVDTQDAVIDVTGATSFKHESLDFTIHPDSKGLRVFSLRTPLYVKGTYK HPDVSVNPAVVALRAGGAVALAFAAPVAAVLPVLELQPAPDSPCGKLLADVRQRPTAPPPGKVYRSGQTGRAADGSPKDP AAAPARQPALPLRDPTTAGG
Sequences:
>Translated_740_residues MRTSARVILGLGITPIVIVAAAIVFVLTFDWNRAKPYLNDHVSQAVGRPFAINGDLALTWKKPEGESGWRAYVPWPRLIA SDIAIGNPDWARQPHVATVQRLTFVLEALPLLAHRIVIPSVTLDTPMIALERDSQNRNNWTFHFGAQDSQPSDWKLELRE IAFSKGSVQLDDEVKRIHLAATLDTVDNQALYTAASGTAIRGSEPAAPSASGAAASTAPAAPDPQQPYGIAWTVKGTYNN AAIRGSGKAGGVLRLQDARRPYPLQADVTVGKTRIDLAGTLTNPSSLTALDLRLHLSGASMAHLYPLTGVVLPDTPPFDT RGRLIGELRRQGSSWRYEQFTGRVGGSDLGGTLTFAMRPEPGQRPQLTGELVSHQLLFADLAPIIGADSNASKQRRDAPV RQPADKVLPVEPFRTDRWNAIDADVKFTGERIVRTADLPIDHLVTHIKLQDAVLTLDPLNFGVAGGTLTSNLRLDGQSAP MQASAALAARHFKIRQLFPNIESMHASIGEINGDARLSATGNSVAALLGASNGELKILVEQGTVSKFILEAMGLNVGNVI LTKLFGDKQVSINCAAGDFAVSDGLAQARTFVVDTQDAVIDVTGATSFKHESLDFTIHPDSKGLRVFSLRTPLYVKGTYK HPDVSVNPAVVALRAGGAVALAFAAPVAAVLPVLELQPAPDSPCGKLLADVRQRPTAPPPGKVYRSGQTGRAADGSPKDP AAAPARQPALPLRDPTTAGG >Mature_740_residues MRTSARVILGLGITPIVIVAAAIVFVLTFDWNRAKPYLNDHVSQAVGRPFAINGDLALTWKKPEGESGWRAYVPWPRLIA SDIAIGNPDWARQPHVATVQRLTFVLEALPLLAHRIVIPSVTLDTPMIALERDSQNRNNWTFHFGAQDSQPSDWKLELRE IAFSKGSVQLDDEVKRIHLAATLDTVDNQALYTAASGTAIRGSEPAAPSASGAAASTAPAAPDPQQPYGIAWTVKGTYNN AAIRGSGKAGGVLRLQDARRPYPLQADVTVGKTRIDLAGTLTNPSSLTALDLRLHLSGASMAHLYPLTGVVLPDTPPFDT RGRLIGELRRQGSSWRYEQFTGRVGGSDLGGTLTFAMRPEPGQRPQLTGELVSHQLLFADLAPIIGADSNASKQRRDAPV RQPADKVLPVEPFRTDRWNAIDADVKFTGERIVRTADLPIDHLVTHIKLQDAVLTLDPLNFGVAGGTLTSNLRLDGQSAP MQASAALAARHFKIRQLFPNIESMHASIGEINGDARLSATGNSVAALLGASNGELKILVEQGTVSKFILEAMGLNVGNVI LTKLFGDKQVSINCAAGDFAVSDGLAQARTFVVDTQDAVIDVTGATSFKHESLDFTIHPDSKGLRVFSLRTPLYVKGTYK HPDVSVNPAVVALRAGGAVALAFAAPVAAVLPVLELQPAPDSPCGKLLADVRQRPTAPPPGKVYRSGQTGRAADGSPKDP AAAPARQPALPLRDPTTAGG
Specific function: Unknown
COG id: COG2982
COG function: function code M; Uncharacterized protein involved in outer membrane biogenesis
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI226510981, Length=708, Percent_Identity=39.1242937853107, Blast_Score=531, Evalue=1e-152,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007844 [H]
Pfam domain/function: PF05170 AsmA [H]
EC number: NA
Molecular weight: Translated: 78821; Mature: 78821
Theoretical pI: Translated: 9.33; Mature: 9.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTSARVILGLGITPIVIVAAAIVFVLTFDWNRAKPYLNDHVSQAVGRPFAINGDLALTW CCCCCEEEEECCCHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHCCCEEECCCEEEEE KKPEGESGWRAYVPWPRLIASDIAIGNPDWARQPHVATVQRLTFVLEALPLLAHRIVIPS ECCCCCCCCEEECCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECC VTLDTPMIALERDSQNRNNWTFHFGAQDSQPSDWKLELREIAFSKGSVQLDDEVKRIHLA EECCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEEHHHCCCCEEECCCCEEEEEE ATLDTVDNQALYTAASGTAIRGSEPAAPSASGAAASTAPAAPDPQQPYGIAWTVKGTYNN EEEECCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC AAIRGSGKAGGVLRLQDARRPYPLQADVTVGKTRIDLAGTLTNPSSLTALDLRLHLSGAS EEEECCCCCCCEEEECCCCCCCCCEECEEECCEEEEEEEECCCCCCEEEEEEEEEECCCC MAHLYPLTGVVLPDTPPFDTRGRLIGELRRQGSSWRYEQFTGRVGGSDLGGTLTFAMRPE EEEEEEECCEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCC PGQRPQLTGELVSHQLLFADLAPIIGADSNASKQRRDAPVRQPADKVLPVEPFRTDRWNA CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCCE IDADVKFTGERIVRTADLPIDHLVTHIKLQDAVLTLDPLNFGVAGGTLTSNLRLDGQSAP ECCCEEECCCEEEEECCCCHHHHHHEEEEECEEEEECCCCCCCCCCEEEEEEEECCCCCC MQASAALAARHFKIRQLFPNIESMHASIGEINGDARLSATGNSVAALLGASNGELKILVE CHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCEEEEEE QGTVSKFILEAMGLNVGNVILTKLFGDKQVSINCAAGDFAVSDGLAQARTFVVDTQDAVI CCCHHHHHHHHHCCCCCHHHEEEECCCCEEEEEEECCCEEHHCCHHHCEEEEEECCCCEE DVTGATSFKHESLDFTIHPDSKGLRVFSLRTPLYVKGTYKHPDVSVNPAVVALRAGGAVA EEECCCCCCCCCEEEEECCCCCCCEEEEECCCEEEEECCCCCCCCCCCEEEEEECCCEEE LAFAAPVAAVLPVLELQPAPDSPCGKLLADVRQRPTAPPPGKVYRSGQTGRAADGSPKDP EHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCC AAAPARQPALPLRDPTTAGG CCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRTSARVILGLGITPIVIVAAAIVFVLTFDWNRAKPYLNDHVSQAVGRPFAINGDLALTW CCCCCEEEEECCCHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHCCCEEECCCEEEEE KKPEGESGWRAYVPWPRLIASDIAIGNPDWARQPHVATVQRLTFVLEALPLLAHRIVIPS ECCCCCCCCEEECCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECC VTLDTPMIALERDSQNRNNWTFHFGAQDSQPSDWKLELREIAFSKGSVQLDDEVKRIHLA EECCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEEHHHCCCCEEECCCCEEEEEE ATLDTVDNQALYTAASGTAIRGSEPAAPSASGAAASTAPAAPDPQQPYGIAWTVKGTYNN EEEECCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC AAIRGSGKAGGVLRLQDARRPYPLQADVTVGKTRIDLAGTLTNPSSLTALDLRLHLSGAS EEEECCCCCCCEEEECCCCCCCCCEECEEECCEEEEEEEECCCCCCEEEEEEEEEECCCC MAHLYPLTGVVLPDTPPFDTRGRLIGELRRQGSSWRYEQFTGRVGGSDLGGTLTFAMRPE EEEEEEECCEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCC PGQRPQLTGELVSHQLLFADLAPIIGADSNASKQRRDAPVRQPADKVLPVEPFRTDRWNA CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCCE IDADVKFTGERIVRTADLPIDHLVTHIKLQDAVLTLDPLNFGVAGGTLTSNLRLDGQSAP ECCCEEECCCEEEEECCCCHHHHHHEEEEECEEEEECCCCCCCCCCEEEEEEEECCCCCC MQASAALAARHFKIRQLFPNIESMHASIGEINGDARLSATGNSVAALLGASNGELKILVE CHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCEEEEEE QGTVSKFILEAMGLNVGNVILTKLFGDKQVSINCAAGDFAVSDGLAQARTFVVDTQDAVI CCCHHHHHHHHHCCCCCHHHEEEECCCCEEEEEEECCCEEHHCCHHHCEEEEEECCCCEE DVTGATSFKHESLDFTIHPDSKGLRVFSLRTPLYVKGTYKHPDVSVNPAVVALRAGGAVA EEECCCCCCCCCEEEEECCCCCCCEEEEECCCEEEEECCCCCCCCCCCEEEEEECCCEEE LAFAAPVAAVLPVLELQPAPDSPCGKLLADVRQRPTAPPPGKVYRSGQTGRAADGSPKDP EHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCC AAAPARQPALPLRDPTTAGG CCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]