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The map label for this gene is yqgF [C]

Identifier: 17545395

GI number: 17545395

Start: 724985

End: 725419

Strand: Direct

Name: yqgF [C]

Synonym: RSc0676

Alternate gene names: 17545395

Gene position: 724985-725419 (Clockwise)

Preceding gene: 17545394

Following gene: 17545396

Centisome position: 19.51

GC content: 64.14

Gene sequence:

>435_bases
ATGCCTGAGCCGGCGCGACCGGCCCCCGCCCCCGTGCCCGTTCACGGCACCCTGTTGGCATTCGATTACGGCGAAAAGCG
CATCGGCGTGGCGCTGGGCAACTCCATCACGCGTTCGGCGCGGGCGCTGGAAGTCATCCCCAACCGTTCGGTCGAGTACC
GTTTCACGCAGATCACGCGGCTGGTCAATGCATGGCAGCCGGTCGGCTTCGTGGTCGGCATGCCGGTTCATCCGGAAGGC
GAGGACCAGCCGATGATCAAGCTGGCCAAGCGTTTCGGCAATCAGTTGCATGGTCGCTATGGCCTGCCGGTCACCTGGGT
GGATGAACGCTACTCGTCGATTGCCGCACAGGATGCCGGCGCCACCGACGACGTGCTCGATGCCGAGGCCGCGCGCATCA
TCCTCCAACAATTCTTCGACGAATCACACGCATGA

Upstream 100 bases:

>100_bases
GATCCCGAGATCATCTTCAATGTACCGGCCGAGGAGCGCTTTGCCGCCGCGCTGAGACTGCTCGGCATCAATCCCGCCAT
GCTCTCCGGTGAGGCCGGGC

Downstream 100 bases:

>100_bases
CATCGCAACAGATCGATGCCGAGGCGCTCTACCAGAGCCTCGTCGCGCAGCTTCGTACGCGGATGGCCGGCACGCCCGCC
GGCGATTGGTCGGTGGCCGG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MPEPARPAPAPVPVHGTLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFTQITRLVNAWQPVGFVVGMPVHPEG
EDQPMIKLAKRFGNQLHGRYGLPVTWVDERYSSIAAQDAGATDDVLDAEAARIILQQFFDESHA

Sequences:

>Translated_144_residues
MPEPARPAPAPVPVHGTLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFTQITRLVNAWQPVGFVVGMPVHPEG
EDQPMIKLAKRFGNQLHGRYGLPVTWVDERYSSIAAQDAGATDDVLDAEAARIILQQFFDESHA
>Mature_143_residues
PEPARPAPAPVPVHGTLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFTQITRLVNAWQPVGFVVGMPVHPEGE
DQPMIKLAKRFGNQLHGRYGLPVTWVDERYSSIAAQDAGATDDVLDAEAARIILQQFFDESHA

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=138, Percent_Identity=36.9565217391304, Blast_Score=99, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_RALSO (Q8Y1L4)

Other databases:

- EMBL:   AL646052
- RefSeq:   NP_518797.1
- ProteinModelPortal:   Q8Y1L4
- SMR:   Q8Y1L4
- GeneID:   1219481
- GenomeReviews:   AL646052_GR
- KEGG:   rso:RSc0676
- NMPDR:   fig|267608.1.peg.676
- HOGENOM:   HBG607919
- OMA:   ESYFENQ
- ProtClustDB:   PRK00109
- BioCyc:   RSOL267608:RSC0676-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15863; Mature: 15732

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEPARPAPAPVPVHGTLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFTQITR
CCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHEEECCCCCCHHHHHHHHH
LVNAWQPVGFVVGMPVHPEGEDQPMIKLAKRFGNQLHGRYGLPVTWVDERYSSIAAQDAG
HHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCC
ATDDVLDAEAARIILQQFFDESHA
CCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PEPARPAPAPVPVHGTLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFTQITR
CCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHEEECCCCCCHHHHHHHHH
LVNAWQPVGFVVGMPVHPEGEDQPMIKLAKRFGNQLHGRYGLPVTWVDERYSSIAAQDAG
HHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCC
ATDDVLDAEAARIILQQFFDESHA
CCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852