| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is yheT [H]
Identifier: 17545282
GI number: 17545282
Start: 608139
End: 609254
Strand: Reverse
Name: yheT [H]
Synonym: RSc0563
Alternate gene names: 17545282
Gene position: 609254-608139 (Counterclockwise)
Preceding gene: 17545283
Following gene: 17545281
Centisome position: 16.39
GC content: 71.95
Gene sequence:
>1116_bases ATGATCCGCCCGTTCCGCTCCGCCGCTCCCGCCGACCTCAACCTGGGCGCGCTGCTCATCGGCCCGTTCGAGCCGCACGC GTTCCGCTCGCCCTGGTGGCTGATCGGCGGCAACGCGCAGACCATCGTCCCGGCGCGGCTGTGGCGCTTCCCGCGCATCG CGTACCGGCGCGAGCGCTGGGACACGCCCGACGGCGACTTCATCGATCTCGACTGGACCACGCACGAAGCCGATGCGCAC ACGCCGCTGGTGGTACTGTTCCACGGCCTGGAAGGCGACTCGCGCAGCCACTACGCCCAATTGATGATGGATGCGCTGCG CGCGCGCCGCTGGCCCGGCGTGGTGCCGCATTTCCGCGGCTGCTCGGGCGAACTGAACCGCGCGCCGCGCATGTACCACT CCGGCGACTCGGCCGAGATCGCGTGGATCCTCGACCGGCTCTACCGGACGCACTGCGCGCCGCACGGCCGCAAGCTGCTG GCGGTGGGCATCTCGCTGGGCGGCAACATGCTGCTGCGCCACCTGGGCGAGCGCGGCGCCGATGCGCGCCAGCTGAGCGC CGCCGCCACCGTCTCCGCCCCGCTGGACATGATGGCGGGCGGCGCGGCGCTGTCCCAGGGCTTCGGCATGCTCTACACCC GCATGTTCCTGCGCACGCTCAAGCAGAAGGCCGCGGCCAAGCTCGACCAGCATCCCGGCCTGTACGACCGCCACGCCATG CTGGCCGCGCGCAGCTTCGTCGAATTCGACAACCTCGTCACCGCGCCGCTGCACGGCTACCGCAACGTCTACGACTATTG GACGCGCGCCTCGTCCAAGCCGGTACTGCGCGATGTGCGCGTGCCGGTGCTGGTGCTGAACGCGCGCAACGATCCCTTCC TGCCCGGACGCCACCTGCCCGGCCCCGGCGACGTCTCGCCCGACGTGGTGCTCGACCAGCCGCTGCACGGCGGCCACGTC GGCTTCCTGATGCGGCGCGACGGCAAGCTGCGCCATCTCCCGCTGGCCGGCCGCATCGACTGGATGCCGGCGCGCCTGCT GCGCTTCTTCGACGACGTGCTCGGCCGCACGCCCCGCCCGGATGCCCCCGAACACCCCGGAGCCGACCGTGGATGA
Upstream 100 bases:
>100_bases AGGCGGCCGAGGAGCGCGTGGCCGCATCGATCGCCAGCGTCGCGCATTCCCTGCACTGATCCCCGCCCGGCGACGGGCGC AGGTGACTCTGCCTGAGACG
Downstream 100 bases:
>100_bases GATCGTCCGCCAGGCCATGGCCCGGTGGCCCGACGTGCCCGACTGCTTCGGCTGGCTGGCGCTCGACCGGCGCGGCCAAT GGCGCATGCGCAACGAATAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 371; Mature: 371
Protein sequence:
>371_residues MIRPFRSAAPADLNLGALLIGPFEPHAFRSPWWLIGGNAQTIVPARLWRFPRIAYRRERWDTPDGDFIDLDWTTHEADAH TPLVVLFHGLEGDSRSHYAQLMMDALRARRWPGVVPHFRGCSGELNRAPRMYHSGDSAEIAWILDRLYRTHCAPHGRKLL AVGISLGGNMLLRHLGERGADARQLSAAATVSAPLDMMAGGAALSQGFGMLYTRMFLRTLKQKAAAKLDQHPGLYDRHAM LAARSFVEFDNLVTAPLHGYRNVYDYWTRASSKPVLRDVRVPVLVLNARNDPFLPGRHLPGPGDVSPDVVLDQPLHGGHV GFLMRRDGKLRHLPLAGRIDWMPARLLRFFDDVLGRTPRPDAPEHPGADRG
Sequences:
>Translated_371_residues MIRPFRSAAPADLNLGALLIGPFEPHAFRSPWWLIGGNAQTIVPARLWRFPRIAYRRERWDTPDGDFIDLDWTTHEADAH TPLVVLFHGLEGDSRSHYAQLMMDALRARRWPGVVPHFRGCSGELNRAPRMYHSGDSAEIAWILDRLYRTHCAPHGRKLL AVGISLGGNMLLRHLGERGADARQLSAAATVSAPLDMMAGGAALSQGFGMLYTRMFLRTLKQKAAAKLDQHPGLYDRHAM LAARSFVEFDNLVTAPLHGYRNVYDYWTRASSKPVLRDVRVPVLVLNARNDPFLPGRHLPGPGDVSPDVVLDQPLHGGHV GFLMRRDGKLRHLPLAGRIDWMPARLLRFFDDVLGRTPRPDAPEHPGADRG >Mature_371_residues MIRPFRSAAPADLNLGALLIGPFEPHAFRSPWWLIGGNAQTIVPARLWRFPRIAYRRERWDTPDGDFIDLDWTTHEADAH TPLVVLFHGLEGDSRSHYAQLMMDALRARRWPGVVPHFRGCSGELNRAPRMYHSGDSAEIAWILDRLYRTHCAPHGRKLL AVGISLGGNMLLRHLGERGADARQLSAAATVSAPLDMMAGGAALSQGFGMLYTRMFLRTLKQKAAAKLDQHPGLYDRHAM LAARSFVEFDNLVTAPLHGYRNVYDYWTRASSKPVLRDVRVPVLVLNARNDPFLPGRHLPGPGDVSPDVVLDQPLHGGHV GFLMRRDGKLRHLPLAGRIDWMPARLLRFFDDVLGRTPRPDAPEHPGADRG
Specific function: Unknown
COG id: COG0429
COG function: function code R; Predicted hydrolase of the alpha/beta-hydrolase fold
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AB hydrolase superfamily. AB hydrolase 4 family [H]
Homologues:
Organism=Homo sapiens, GI23397663, Length=314, Percent_Identity=30.8917197452229, Blast_Score=137, Evalue=2e-32, Organism=Homo sapiens, GI194578891, Length=325, Percent_Identity=30.7692307692308, Blast_Score=123, Evalue=2e-28, Organism=Homo sapiens, GI23397659, Length=257, Percent_Identity=23.7354085603113, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI23397661, Length=257, Percent_Identity=23.7354085603113, Blast_Score=80, Evalue=2e-15, Organism=Escherichia coli, GI1789752, Length=314, Percent_Identity=40.7643312101911, Blast_Score=207, Evalue=1e-54, Organism=Caenorhabditis elegans, GI17566110, Length=317, Percent_Identity=26.813880126183, Blast_Score=108, Evalue=5e-24, Organism=Caenorhabditis elegans, GI71985405, Length=310, Percent_Identity=25.4838709677419, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI71985413, Length=194, Percent_Identity=27.8350515463918, Blast_Score=70, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6323866, Length=298, Percent_Identity=25.503355704698, Blast_Score=107, Evalue=4e-24, Organism=Saccharomyces cerevisiae, GI6319655, Length=271, Percent_Identity=29.8892988929889, Blast_Score=102, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6325162, Length=279, Percent_Identity=29.7491039426523, Blast_Score=89, Evalue=1e-18, Organism=Drosophila melanogaster, GI24652003, Length=323, Percent_Identity=30.3405572755418, Blast_Score=142, Evalue=4e-34, Organism=Drosophila melanogaster, GI281398151, Length=323, Percent_Identity=30.3405572755418, Blast_Score=142, Evalue=5e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012020 - InterPro: IPR000073 - InterPro: IPR000952 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: NA
Molecular weight: Translated: 41522; Mature: 41522
Theoretical pI: Translated: 10.28; Mature: 10.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRPFRSAAPADLNLGALLIGPFEPHAFRSPWWLIGGNAQTIVPARLWRFPRIAYRRERW CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEHHHHHHHCHHHHHHHHCC DTPDGDFIDLDWTTHEADAHTPLVVLFHGLEGDSRSHYAQLMMDALRARRWPGVVPHFRG CCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC CSGELNRAPRMYHSGDSAEIAWILDRLYRTHCAPHGRKLLAVGISLGGNMLLRHLGERGA CCCCHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHCCC DARQLSAAATVSAPLDMMAGGAALSQGFGMLYTRMFLRTLKQKAAAKLDQHPGLYDRHAM CHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH LAARSFVEFDNLVTAPLHGYRNVYDYWTRASSKPVLRDVRVPVLVLNARNDPFLPGRHLP HHHHHHHHHHHEEEHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCC GPGDVSPDVVLDQPLHGGHVGFLMRRDGKLRHLPLAGRIDWMPARLLRFFDDVLGRTPRP CCCCCCCCEEECCCCCCCCEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC DAPEHPGADRG CCCCCCCCCCC >Mature Secondary Structure MIRPFRSAAPADLNLGALLIGPFEPHAFRSPWWLIGGNAQTIVPARLWRFPRIAYRRERW CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEHHHHHHHCHHHHHHHHCC DTPDGDFIDLDWTTHEADAHTPLVVLFHGLEGDSRSHYAQLMMDALRARRWPGVVPHFRG CCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC CSGELNRAPRMYHSGDSAEIAWILDRLYRTHCAPHGRKLLAVGISLGGNMLLRHLGERGA CCCCHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHCCC DARQLSAAATVSAPLDMMAGGAALSQGFGMLYTRMFLRTLKQKAAAKLDQHPGLYDRHAM CHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH LAARSFVEFDNLVTAPLHGYRNVYDYWTRASSKPVLRDVRVPVLVLNARNDPFLPGRHLP HHHHHHHHHHHEEEHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCC GPGDVSPDVVLDQPLHGGHVGFLMRRDGKLRHLPLAGRIDWMPARLLRFFDDVLGRTPRP CCCCCCCCEEECCCCCCCCEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC DAPEHPGADRG CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]