| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
Click here to switch to the map view.
The map label for this gene is yjbE [H]
Identifier: 17545275
GI number: 17545275
Start: 601059
End: 601757
Strand: Direct
Name: yjbE [H]
Synonym: RSc0556
Alternate gene names: 17545275
Gene position: 601059-601757 (Clockwise)
Preceding gene: 17545274
Following gene: 17545276
Centisome position: 16.17
GC content: 65.67
Gene sequence:
>699_bases ATGGCGCTCACCTCCAGCGCATTCTGGTTCGCACTTGGCTCCATCATCCTGACCAACATCGTGCTGTCGGGCGACAACGC TGTCGTCATCGCCCTGGCGGCACGCAATCTGCCTCGCCGGCAGCAGCGGCAGGCGATCTTCTGGGGCAGTGCCGCGGCCA TCGCGCTGCGGATTGCGCTGACCGTGCTGGCAGTCAAGCTGCTGGCGCTTCCTTATCTGAAAACGATCGGTGCGGTGCTG CTGGTCTACATCGGCATCAAGCTGCTGAGCGAAGCCGAAGACGAGGCGGCAGGAGAGCACCGCCCACACGACGGCCTGTG GCCCGCCATCCGAACCATTCTGATTGCCGACCTGGTGATGTCGCTCGACAACGTCGTCGCCGTGGCCGCCGCGGCAGAGA AGGGGCCGCCGGGGACCGACGTTGCGTTGCTCGTGCTGGGGCTCGGGCTGTCGATTCCGCTGATCATCTTCGGCAGCACG CTCCTGGTGGCACTGATGGTGCGGCTTCCGCTCATCGTCACGCTCGCGGCGGCACTGCTCGGCTATCTGGCGGGCGACAT GCTGGTGACCGATCCGGTGGACGCCGGCTGGTTCATGCAAGCCATCCCGTATGCCGATGTCGCGATCGGCTGTCTTGGCG CGTTGATCGTCGTGATCGTGGGCTGGTGGATGGGGCGGCGTTCACTGCGCCAGGCGTGA
Upstream 100 bases:
>100_bases TTGTTTGGGCGGCCGCGCCGCCGCGTGCACACTCGGTGTGAGGCGTGTATAAGCAATCACGGCAAGCGGTTCGCGCACGT GTACATCCACGGGGACGGCC
Downstream 100 bases:
>100_bases CTTGATGAGACACCCCCCGAAAGTAGGTCGTGACGATCTTTGTCCGGTTTTTTGCCAAGAAAGGTCAGTTTTGCGCACGA ATTCTCGCCAAATCTTACCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 232; Mature: 231
Protein sequence:
>232_residues MALTSSAFWFALGSIILTNIVLSGDNAVVIALAARNLPRRQQRQAIFWGSAAAIALRIALTVLAVKLLALPYLKTIGAVL LVYIGIKLLSEAEDEAAGEHRPHDGLWPAIRTILIADLVMSLDNVVAVAAAAEKGPPGTDVALLVLGLGLSIPLIIFGST LLVALMVRLPLIVTLAAALLGYLAGDMLVTDPVDAGWFMQAIPYADVAIGCLGALIVVIVGWWMGRRSLRQA
Sequences:
>Translated_232_residues MALTSSAFWFALGSIILTNIVLSGDNAVVIALAARNLPRRQQRQAIFWGSAAAIALRIALTVLAVKLLALPYLKTIGAVL LVYIGIKLLSEAEDEAAGEHRPHDGLWPAIRTILIADLVMSLDNVVAVAAAAEKGPPGTDVALLVLGLGLSIPLIIFGST LLVALMVRLPLIVTLAAALLGYLAGDMLVTDPVDAGWFMQAIPYADVAIGCLGALIVVIVGWWMGRRSLRQA >Mature_231_residues ALTSSAFWFALGSIILTNIVLSGDNAVVIALAARNLPRRQQRQAIFWGSAAAIALRIALTVLAVKLLALPYLKTIGAVLL VYIGIKLLSEAEDEAAGEHRPHDGLWPAIRTILIADLVMSLDNVVAVAAAAEKGPPGTDVALLVLGLGLSIPLIIFGSTL LVALMVRLPLIVTLAAALLGYLAGDMLVTDPVDAGWFMQAIPYADVAIGCLGALIVVIVGWWMGRRSLRQA
Specific function: Unknown
COG id: COG0861
COG function: function code P; Membrane protein TerC, possibly involved in tellurium resistance
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the terC family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005496 - InterPro: IPR022301 [H]
Pfam domain/function: PF03741 TerC [H]
EC number: NA
Molecular weight: Translated: 24434; Mature: 24302
Theoretical pI: Translated: 7.52; Mature: 7.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALTSSAFWFALGSIILTNIVLSGDNAVVIALAARNLPRRQQRQAIFWGSAAAIALRIAL CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHH TVLAVKLLALPYLKTIGAVLLVYIGIKLLSEAEDEAAGEHRPHDGLWPAIRTILIADLVM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH SLDNVVAVAAAAEKGPPGTDVALLVLGLGLSIPLIIFGSTLLVALMVRLPLIVTLAAALL HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GYLAGDMLVTDPVDAGWFMQAIPYADVAIGCLGALIVVIVGWWMGRRSLRQA HHHHCCCEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ALTSSAFWFALGSIILTNIVLSGDNAVVIALAARNLPRRQQRQAIFWGSAAAIALRIAL CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHH TVLAVKLLALPYLKTIGAVLLVYIGIKLLSEAEDEAAGEHRPHDGLWPAIRTILIADLVM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH SLDNVVAVAAAAEKGPPGTDVALLVLGLGLSIPLIIFGSTLLVALMVRLPLIVTLAAALL HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GYLAGDMLVTDPVDAGWFMQAIPYADVAIGCLGALIVVIVGWWMGRRSLRQA HHHHCCCEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]