| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is ycbL [C]
Identifier: 17545000
GI number: 17545000
Start: 314264
End: 315343
Strand: Direct
Name: ycbL [C]
Synonym: RSc0281
Alternate gene names: 17545000
Gene position: 314264-315343 (Clockwise)
Preceding gene: 17544976
Following gene: 17545001
Centisome position: 8.46
GC content: 69.81
Gene sequence:
>1080_bases ATGAACGCGCTCGAACACCAACTCGACTATCCCCTGGGCGACACGCTGCCCGCAGGCGGCATCCGCCACCAGGTCGCGCC CGGCATCTACTGGCTGCGCATGCCGCTGCCGTTCGCGCTGGACCACATCAACCTGTGGCTGCTGCGCGATCGCCAGGACG GCCAGGACGGCTGGACCATCGTCGACTGCGGCATCAACCACGAAGCCATCCGCGCGTACTGGGAAACCCTCTTCGCCGAC GGGCTCGACGGCCTGCCCGTGCTGCGCGTGCTGGTCACGCACTGCCATCCCGACCACGTCGGCCTGTCGCGCTGGTTGTG CGAAGGCGGCGACCACCAACGCTGGAACGTGCGCCTGTGGATGAGCCTGGGCGATTACGCCTTCGCCCGCATGCTGGTGG GCGGCACCGGCGCGTCCAATGCCGGGGGCGAGTCCGCCGCGCGCCATTTCGCCCGCCACGGCCTGACCGACGCCGAGGCC GTCGAGCGCATCCGCAACCGCAAGGACTACTACAGCACGCTGGTGCCGGGCGTGCCCGAGCAGTACCGCCGCATCATGGA CGGCCAGGTCATCGCGATCGGCCCGCACCGCTGGCGTGTCATCACCGGCTTCGGCCACGCGCCCGAGCACGTCGCGCTCT ACAGCGAAGATGCCGGCGTGCTGATCTCCGGCGACATGGTGCTGCCGCGCATCTCCACCAACGTCAGCGTGTTCGACATC GAGCCCGAGGCCGATCCGCTCACGCTGTATCTCACCTCGCTCGACAAGTACGAGGCGTTGCCGGAAGACGTGCTGATCCT GCCCTCGCACGGGCGGCCGTTCCGCGGCCTGCACACGCGCATCCGCCAGCTGCGCGACCACCACGCCGACCGCCTCGCCG ATACGCTGGCCGCGTGCCGGCGCGCGCCGAGCTCGGCACGCGACATCGTCGACGTCATCTTCAAGCGCCAGTTCGACGTG CACCAGATGACCTTCGCGATGGGCGAAGCGCTGGCCCACCTGCACGCGCTGTGGCACCGCGGCGAGGTGGTCCGCGCGCC GGGCGCCGATGGCATCATCCGATTCCACGCACCGGCCTGA
Upstream 100 bases:
>100_bases TAAGATGGAAGGCCGGCTTGCGAATTGACGTTTACGTTAGCGTCAAAGCCGCCAGACCGCAATGCAGCGGCGACAAGAGG ATAAGAAAGAGACCCCATCC
Downstream 100 bases:
>100_bases CGCCGACCAGGAGCCCAGCATGTCCGAACACGACGTTCTCGACGATACCGCCGCCGTGCTGCCGTTTCCCGCACACACGC CGCATGCGCCTTACTACGCG
Product: hypothetical protein
Products: NA
Alternate protein names: Metallo-Beta-Lactamase Family Protein; Beta-Lactamase Domain Protein; Beta-Lactamase-Like; Beta-Lactamase-Like Protein; Metallo-Beta-Lactamase Superfamily Protein; Beta Lactamase; Zn-Dependent Hydrolase; Metallo-Beta-Lactamase Superfamily; Metallo-Beta-Lactamase Domain Protein; Zinc Metallohydrolase; Metallo-Beta-Lactamase; Zinc Metallohydrolase Glyoxalase II Family; Zn-Dependent Hydrolases; Metallo-Beta-Lactamase Family Hydrolase; Zn-Dependent Hydrolase Glyoxylase; AMP-Dependent Synthetase And Ligase; Beta-Lactamase Class B; Metallo-Hydrolase/Oxidoreductase Superfamily Protein; Metallo-Dependent Enzymatic Protein
Number of amino acids: Translated: 359; Mature: 359
Protein sequence:
>359_residues MNALEHQLDYPLGDTLPAGGIRHQVAPGIYWLRMPLPFALDHINLWLLRDRQDGQDGWTIVDCGINHEAIRAYWETLFAD GLDGLPVLRVLVTHCHPDHVGLSRWLCEGGDHQRWNVRLWMSLGDYAFARMLVGGTGASNAGGESAARHFARHGLTDAEA VERIRNRKDYYSTLVPGVPEQYRRIMDGQVIAIGPHRWRVITGFGHAPEHVALYSEDAGVLISGDMVLPRISTNVSVFDI EPEADPLTLYLTSLDKYEALPEDVLILPSHGRPFRGLHTRIRQLRDHHADRLADTLAACRRAPSSARDIVDVIFKRQFDV HQMTFAMGEALAHLHALWHRGEVVRAPGADGIIRFHAPA
Sequences:
>Translated_359_residues MNALEHQLDYPLGDTLPAGGIRHQVAPGIYWLRMPLPFALDHINLWLLRDRQDGQDGWTIVDCGINHEAIRAYWETLFAD GLDGLPVLRVLVTHCHPDHVGLSRWLCEGGDHQRWNVRLWMSLGDYAFARMLVGGTGASNAGGESAARHFARHGLTDAEA VERIRNRKDYYSTLVPGVPEQYRRIMDGQVIAIGPHRWRVITGFGHAPEHVALYSEDAGVLISGDMVLPRISTNVSVFDI EPEADPLTLYLTSLDKYEALPEDVLILPSHGRPFRGLHTRIRQLRDHHADRLADTLAACRRAPSSARDIVDVIFKRQFDV HQMTFAMGEALAHLHALWHRGEVVRAPGADGIIRFHAPA >Mature_359_residues MNALEHQLDYPLGDTLPAGGIRHQVAPGIYWLRMPLPFALDHINLWLLRDRQDGQDGWTIVDCGINHEAIRAYWETLFAD GLDGLPVLRVLVTHCHPDHVGLSRWLCEGGDHQRWNVRLWMSLGDYAFARMLVGGTGASNAGGESAARHFARHGLTDAEA VERIRNRKDYYSTLVPGVPEQYRRIMDGQVIAIGPHRWRVITGFGHAPEHVALYSEDAGVLISGDMVLPRISTNVSVFDI EPEADPLTLYLTSLDKYEALPEDVLILPSHGRPFRGLHTRIRQLRDHHADRLADTLAACRRAPSSARDIVDVIFKRQFDV HQMTFAMGEALAHLHALWHRGEVVRAPGADGIIRFHAPA
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40261; Mature: 40261
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNALEHQLDYPLGDTLPAGGIRHQVAPGIYWLRMPLPFALDHINLWLLRDRQDGQDGWTI CCCHHHHCCCCCCCCCCCCCCCHHHCCCEEEEECCCCHHHCCEEEEEEECCCCCCCCCEE VDCGINHEAIRAYWETLFADGLDGLPVLRVLVTHCHPDHVGLSRWLCEGGDHQRWNVRLW EECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEEEE MSLGDYAFARMLVGGTGASNAGGESAARHFARHGLTDAEAVERIRNRKDYYSTLVPGVPE EEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCH QYRRIMDGQVIAIGPHRWRVITGFGHAPEHVALYSEDAGVLISGDMVLPRISTNVSVFDI HHHHHHCCCEEEECCCEEEEEEECCCCCCEEEEEECCCCEEEECCEEECEECCCEEEEEE EPEADPLTLYLTSLDKYEALPEDVLILPSHGRPFRGLHTRIRQLRDHHADRLADTLAACR CCCCCCEEEEEECCHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RAPSSARDIVDVIFKRQFDVHQMTFAMGEALAHLHALWHRGEVVRAPGADGIIRFHAPA CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEECCC >Mature Secondary Structure MNALEHQLDYPLGDTLPAGGIRHQVAPGIYWLRMPLPFALDHINLWLLRDRQDGQDGWTI CCCHHHHCCCCCCCCCCCCCCCHHHCCCEEEEECCCCHHHCCEEEEEEECCCCCCCCCEE VDCGINHEAIRAYWETLFADGLDGLPVLRVLVTHCHPDHVGLSRWLCEGGDHQRWNVRLW EECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEEEE MSLGDYAFARMLVGGTGASNAGGESAARHFARHGLTDAEAVERIRNRKDYYSTLVPGVPE EEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCH QYRRIMDGQVIAIGPHRWRVITGFGHAPEHVALYSEDAGVLISGDMVLPRISTNVSVFDI HHHHHHCCCEEEECCCEEEEEEECCCCCCEEEEEECCCCEEEECCEEECEECCCEEEEEE EPEADPLTLYLTSLDKYEALPEDVLILPSHGRPFRGLHTRIRQLRDHHADRLADTLAACR CCCCCCEEEEEECCHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RAPSSARDIVDVIFKRQFDVHQMTFAMGEALAHLHALWHRGEVVRAPGADGIIRFHAPA CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA