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The map label for this gene is xylR [C]

Identifier: 17544953

GI number: 17544953

Start: 256430

End: 257176

Strand: Reverse

Name: xylR [C]

Synonym: RSc0234

Alternate gene names: 17544953

Gene position: 257176-256430 (Counterclockwise)

Preceding gene: 17544954

Following gene: 17544952

Centisome position: 6.92

GC content: 74.56

Gene sequence:

>747_bases
ATGCTGGATTTCCGCACCTACGGCCTCGCCGCCCCGCCCCATGCCCACGACTTCGTGCAGGTCGTGATGCCGTCGCGCGG
CGTGCTGGCGATGGAGGTGGACGGCCGCGCCGGCTGCGTCGACGCGCACCACGCCGCACTGATCCCGGCCGGCGCCACGC
ATGCCTTCGAAGCCGCCGGGTCGAACGCCTTCATCGTGCTGGACATCGCCGCGCCCGCGCTCGAAGCGCCCGACCTCGAC
GGCCTGGCCGAGCGGGTGTTCTTCGCGCTCACGCCCGGCCTGCGCGCGCTGGCCGCCTGGCTGCACAGCGCCCAAGCGCC
GCACGCCAGGCCGGTGCTCGATCCCGCACTGGCGCAGGCATGGTCATCGCTGGCGCTGGCGACGCTGGCTGCGCACCCGG
CCAACCGGTCGACGCAGTACCAGGTACGCCCCGATCCGCGCGCCGAACGCGCATGGCGGATGATCGAGCAGCACTATGCG
CAGCCGCTCACCGCGCAAGCGCTGGCCGCCGAAGTGGGGCTGAGCGCCCGGCGGCTGGCCGCGCTGTTCCGTGCCGCCTA
CGGCACCACGCTGCACGCGCGGCTGGCGGCGGTGCGGCTCGGCCATGCGCTGCGGCTGCTGGAGCGCACCGCGCTGCCGA
TCGCCGAGATCGCCGCCCGCACCGGCTATTACGACCAGAGCGCGCTGACCCGCCATCTCAAGGCCGCCCACGGCATCACG
CCCGCGGCCGTGCGGCGCAGCGGCTGA

Upstream 100 bases:

>100_bases
CCGCAGATGGGAGTACGCTACGGCCACGAAACCGCCGTGACGATGCGCGCCTCCATTCCCACCACCCGGTGGTCCGATTG
AACAGGTAGAACAGGCAGCC

Downstream 100 bases:

>100_bases
GCGCCGCGCTGCCAGCGTTCCCGTTTCCGCATTTGCCAAGCGGTGTCCGGCTTCGCCAAGACGGGGCGGCACCGGCGCGC
GCACAGTGCCGGTCCGATCA

Product: transcription regulator protein

Products: NA

Alternate protein names: Transcription Regulator Protein; Transcriptional Regulator AraC Family; Transcriptional Regulator Protein; Transcriptional Regulator; AraC-Like Transcription Regulator

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MLDFRTYGLAAPPHAHDFVQVVMPSRGVLAMEVDGRAGCVDAHHAALIPAGATHAFEAAGSNAFIVLDIAAPALEAPDLD
GLAERVFFALTPGLRALAAWLHSAQAPHARPVLDPALAQAWSSLALATLAAHPANRSTQYQVRPDPRAERAWRMIEQHYA
QPLTAQALAAEVGLSARRLAALFRAAYGTTLHARLAAVRLGHALRLLERTALPIAEIAARTGYYDQSALTRHLKAAHGIT
PAAVRRSG

Sequences:

>Translated_248_residues
MLDFRTYGLAAPPHAHDFVQVVMPSRGVLAMEVDGRAGCVDAHHAALIPAGATHAFEAAGSNAFIVLDIAAPALEAPDLD
GLAERVFFALTPGLRALAAWLHSAQAPHARPVLDPALAQAWSSLALATLAAHPANRSTQYQVRPDPRAERAWRMIEQHYA
QPLTAQALAAEVGLSARRLAALFRAAYGTTLHARLAAVRLGHALRLLERTALPIAEIAARTGYYDQSALTRHLKAAHGIT
PAAVRRSG
>Mature_248_residues
MLDFRTYGLAAPPHAHDFVQVVMPSRGVLAMEVDGRAGCVDAHHAALIPAGATHAFEAAGSNAFIVLDIAAPALEAPDLD
GLAERVFFALTPGLRALAAWLHSAQAPHARPVLDPALAQAWSSLALATLAAHPANRSTQYQVRPDPRAERAWRMIEQHYA
QPLTAQALAAEVGLSARRLAALFRAAYGTTLHARLAAVRLGHALRLLERTALPIAEIAARTGYYDQSALTRHLKAAHGIT
PAAVRRSG

Specific function: Regulatory Protein For The Xylbafghr Operon. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26388; Mature: 26388

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDFRTYGLAAPPHAHDFVQVVMPSRGVLAMEVDGRAGCVDAHHAALIPAGATHAFEAAG
CCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEECCCCCHHHHHCC
SNAFIVLDIAAPALEAPDLDGLAERVFFALTPGLRALAAWLHSAQAPHARPVLDPALAQA
CCEEEEEEECCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
WSSLALATLAAHPANRSTQYQVRPDPRAERAWRMIEQHYAQPLTAQALAAEVGLSARRLA
HHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHH
ALFRAAYGTTLHARLAAVRLGHALRLLERTALPIAEIAARTGYYDQSALTRHLKAAHGIT
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
PAAVRRSG
HHHHCCCC
>Mature Secondary Structure
MLDFRTYGLAAPPHAHDFVQVVMPSRGVLAMEVDGRAGCVDAHHAALIPAGATHAFEAAG
CCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEECCCCCHHHHHCC
SNAFIVLDIAAPALEAPDLDGLAERVFFALTPGLRALAAWLHSAQAPHARPVLDPALAQA
CCEEEEEEECCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
WSSLALATLAAHPANRSTQYQVRPDPRAERAWRMIEQHYAQPLTAQALAAEVGLSARRLA
HHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHH
ALFRAAYGTTLHARLAAVRLGHALRLLERTALPIAEIAARTGYYDQSALTRHLKAAHGIT
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
PAAVRRSG
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA